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    LINC03017 long intergenic non-protein coding RNA 3017 [ Homo sapiens (human) ]

    Gene ID: 101927378, updated on 28-Oct-2024

    Summary

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    Official Symbol
    LINC03017provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 3017provided by HGNC
    Primary source
    HGNC:HGNC:56146
    See related
    Ensembl:ENSG00000235139 AllianceGenome:HGNC:56146
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC03017 in Genome Data Viewer
    Location:
    7q21.11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (84532476..84584318)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (85782181..85834020)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (84161792..84213634)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:83623841-83624402 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:83624403-83624963 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:83631626-83632189 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26218 Neighboring gene semaphorin 3A Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:83684131-83684722 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:83684723-83685314 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:83720483-83720983 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr7:83779267-83779791 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:83779792-83780315 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:83795422-83795922 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:83824219-83825026 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:83835322-83836064 Neighboring gene OCT4-NANOG hESC enhancers GRCh37_chr7:83857426-83857944 and GRCh37_chr7:83857945-83858461 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:83880131-83881330 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:83906806-83907406 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26219 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:84001008-84002207 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_100327 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_100336 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_100364 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:84217793-84218992 Neighboring gene ribosomal protein L7 pseudogene 30 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:84266239-84267014 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:84267015-84267788 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_100503 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_100510 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:84344191-84344373 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_100536 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_100640 Neighboring gene VISTA enhancer hs2328 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 11 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013
    2. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Clone Names

    • AC003984.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110079.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC003984, BX647900
      Related
      ENST00000450977.2

    2. NR_110080.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains alternate 3' exon structure, compared to variant 1.
      Source sequence(s)
      AW052009, BG211446, BX647900
      Related
      ENST00000775960.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      84532476..84584318
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      85782181..85834020
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials