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    Lincred1 long intergenic non-protein coding RNA of erythroid differentiation 1 [ Mus musculus (house mouse) ]

    Gene ID: 100996933, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Lincred1provided by MGI
    Official Full Name
    long intergenic non-protein coding RNA of erythroid differentiation 1provided by MGI
    Primary source
    MGI:MGI:5428668
    See related
    AllianceGenome:MGI:5428668
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in liver E14 (RPKM 6.4), liver E14.5 (RPKM 6.3) and 3 other tissues See more
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    Genomic context

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    See Lincred1 in Genome Data Viewer
    Location:
    2 E2; 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (103731296..103744313)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (103900951..103913968)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_05274 Neighboring gene STARR-seq mESC enhancer starr_05275 Neighboring gene putative 60S ribosomal protein L37a Neighboring gene STARR-seq mESC enhancer starr_05276 Neighboring gene predicted gene, 34948 Neighboring gene STARR-positive B cell enhancer ABC_E4484 Neighboring gene predicted gene, 39895 Neighboring gene STARR-positive B cell enhancer ABC_E9523 Neighboring gene STARR-positive B cell enhancer ABC_E638 Neighboring gene predicted gene, 39896 Neighboring gene LIM domain only 2 Neighboring gene predicted gene, 38515

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development. Paralkar VR, et al. Blood, 2014 Mar 20. PMID 24497530, Free PMC Article
    2. Novel roles for KLF1 in erythropoiesis revealed by mRNA-seq. Tallack MR, et al. Genome Res, 2012 Dec. PMID 22835905, Free PMC Article
    3. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    4. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131913.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL928544

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      103731296..103744313
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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