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    CFAP100-DT CFAP100 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100506907, updated on 22-Oct-2024

    Summary

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    Official Symbol
    CFAP100-DTprovided by HGNC
    Official Full Name
    CFAP100 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:49641
    See related
    Ensembl:ENSG00000249833 AllianceGenome:HGNC:49641
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CCDC37-DT; CCDC37-AS1
    Expression
    Restricted expression toward testis (RPKM 18.0) See more
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    Genomic context

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    See CFAP100-DT in Genome Data Viewer
    Location:
    3q21.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (126393032..126394798, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (129125548..129127314, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (126111875..126113641, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene KLF transcription factor 15 Neighboring gene uncharacterized LOC105374088 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126050110-126050714 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126050715-126051318 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126060213-126060974 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126062507-126063190 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126074793-126075552 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126075553-126076312 Neighboring gene NANOG hESC enhancer GRCh37_chr3:126081217-126081718 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126094973-126095585 Neighboring gene uncharacterized LOC107986044 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126108375-126108923 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126116648-126117157 Neighboring gene cilia and flagella associated protein 100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126127425-126127925 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126136999-126137896 Neighboring gene uncharacterized LOC124906280 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126160086-126160721 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126167171-126168110 Neighboring gene ZXD family zinc finger C Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126186579-126187556 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126193081-126193606 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14677 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14678

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • CCDC37 antisense RNA 1 (head to head)
    • CCDC37 divergent transcript

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103787.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      BI827527, BX109262
      Related
      ENST00000506660.2

    2. NR_103788.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice junction at the 5' end of the second exon and is shorter compared to variant 1.
      Source sequence(s)
      AW241753, BI827527, BX109262
      Related
      ENST00000652761.2

    3. NR_103789.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate exon compared to variant 1.
      Source sequence(s)
      BI827527, BX109262, HY225164
      Related
      ENST00000511287.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      126393032..126394798 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      129125548..129127314 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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