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    RPL23B ribosomal 60S subunit protein L23B [ Saccharomyces cerevisiae S288C ]

    Gene ID: 856853, updated on 2-Nov-2024

    Summary

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    Official Symbol
    RPL23B
    Official Full Name
    ribosomal 60S subunit protein L23B
    Primary source
    SGD:S000000919
    Locus tag
    YER117W
    See related
    AllianceGenome:SGD:S000000919; FungiDB:YER117W; VEuPathDB:YER117W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Located in cytosol and nucleus. Part of cytosolic large ribosomal subunit. Orthologous to human RPL23 (ribosomal protein L23). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See RPL23B in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    2
    Sequence:
    Chromosome: V; NC_001137.3 (396769..397653)

    Chromosome V - NC_001137.3Genomic Context describing neighboring genes Neighboring gene Spr6p Neighboring gene SUMO-targeted ubiquitin ligase complex subunit SLX8 Neighboring gene osmosensor SHO1 Neighboring gene aspartate/glutamate transporter

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001137.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence, map position and genome organization of the RPL17B gene, encoding ribosomal protein L17b in Saccharomyces cerevisiae. Berroteran RW, et al. Yeast, 1995 Jun 30. PMID 7668045
    2. Yeast ribosomal/cytochrome c SET domain methyltransferase subfamily: identification of Rpl23ab methylation sites and recognition motifs. Porras-Yakushi TR, et al. J Biol Chem, 2007 Apr 27. PMID 17327221
    3. The crystal structure of protein-transporting chaperone BCP1 from Saccharomyces cerevisiae. Lin MH, et al. J Struct Biol, 2020 Oct 1. PMID 32805410
    4. A novel SET domain methyltransferase modifies ribosomal protein Rpl23ab in yeast. Porras-Yakushi TR, et al. J Biol Chem, 2005 Oct 14. PMID 16096273
    5. Bcp1 Is the Nuclear Chaperone of Rpl23 in Saccharomyces cerevisiae. Ting YH, et al. J Biol Chem, 2017 Jan 13. PMID 27913624, Free PMC Article

    See all (73) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables large ribosomal subunit rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IC
    Inferred by Curator
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IC
    Inferred by Curator
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic large ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal 60S subunit protein L23B
    NP_011042.3
    • Ribosomal 60S subunit protein L23B; homologous to mammalian ribosomal protein L23 and bacterial L14; RPL23B has a paralog, RPL23A, that arose from the whole genome duplication

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001137.3 Reference assembly

      Range
      396769..397653
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001179007.3 → NP_011042.3  TPA: ribosomal 60S subunit protein L23B [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_011042.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D3DM23, P04451, P0CX41, P0CX42
      UniProtKB/TrEMBL
      A6ZKL6, B3LNL8, C8Z3V8, G2W8S6, N1P744
      Conserved Domains (1) summary
      PTZ00054
      Location:5 → 137
      PTZ00054; 60S ribosomal protein L23; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CX41.1
    P0CX42.1

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