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    wif1.S WNT inhibitory factor 1 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 399375, updated on 17-Aug-2024

    Summary

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    Official Symbol
    wif1.S
    Official Full Name
    WNT inhibitory factor 1 S homeolog
    Primary source
    Xenbase:XB-GENE-865617
    Locus tag
    XELAEV_18021197mg
    See related
    EnsemblRapid:ENSXLAG00005021326
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    wif1; wif-1
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    Location:
    chromosome: 3S
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (90085534..90114170, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (88251178..88279814, complement)

    Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene U5 spliceosomal RNA Neighboring gene glucosamine (N-acetyl)-6-sulfatase S homeolog Neighboring gene TBC1 domain family member 30 S homeolog Neighboring gene LEM domain containing 3 S homeolog Neighboring gene high mobility group AT-hook 2 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression of components of Wnt and Hedgehog pathways in different tissue layers during lung development in Xenopus laevis. Yin A, et al. Gene Expr Patterns, 2010 Oct-Dec. PMID 20682360
    2. A new secreted protein that binds to Wnt proteins and inhibits their activities. Hsieh JC, et al. Nature, 1999 Apr 1. PMID 10201374
    3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. In an examination of signaling pathways in developing Xenopus lung, wif1 was expressed in the mesenchyme layer of the entire lungs through stages 39-41.
      Title: Expression of components of Wnt and Hedgehog pathways in different tissue layers during lung development in Xenopus laevis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables signaling receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    wnt inhibitory factor 1
    Names
    Wnt inhibitory factor-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001090751.1 → NP_001084220.1  wnt inhibitory factor 1 precursor

      See identical proteins and their annotated locations for NP_001084220.1

      Status: PROVISIONAL

      Source sequence(s)
      AF122924
      UniProtKB/Swiss-Prot
      Q9W6F8
      UniProtKB/TrEMBL
      A0A974D8G0, B7ZPZ2
      Related
      ENSXLAP00005062683.1, ENSXLAT00005064136.1
      Conserved Domains (1) summary
      cl02623
      Location:30 → 174
      WIF; WIF domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      90085534..90114170 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W6F8.1 GenPept UniProtKB/Swiss-Prot:Q9W6F8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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