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    TLR7 toll like receptor 7 [ Strigops habroptila (Kakapo) ]

    Gene ID: 115603144, updated on 3-Aug-2024

    Summary

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    Gene symbol
    TLR7
    Gene description
    toll like receptor 7
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strigops habroptila
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
    Orthologs
    human mouse all
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    Genomic context

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    See TLR7 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current bStrHab1.2.pri (GCF_004027225.2) 2 NC_044278.2 (47859089..47871476, complement)
    100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 2 NC_044278.1 (28977768..28990155, complement)

    Chromosome 2 - NC_044278.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115604060 Neighboring gene EGF like domain multiple 6 Neighboring gene thymosin beta 4 X-linked Neighboring gene uncharacterized LOC115603170 Neighboring gene phosphoribosyl pyrophosphate synthetase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pattern recognition receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response to virus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of interleukin-6 production IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in toll-like receptor 7 signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in toll-like receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    toll-like receptor 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bStrHab1.2.pri

    Genomic

    1. NC_044278.2 Reference bStrHab1.2.pri

      Range
      47859089..47871476 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030474836.1 → XP_030330696.1  toll-like receptor 7

      UniProtKB/TrEMBL
      A0A672V4X9
      Conserved Domains (6) summary
      PRK15370
      Location:566 → 777
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      TIGR00864
      Location:751 → 838
      PCC; polycystin cation channel protein
      smart00255
      Location:888 → 1032
      TIR; Toll - interleukin 1 - resistance
      PLN00113
      Location:117 → 575
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:494 → 516
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:62 → 135
      LRR_8; Leucine rich repeat

    2. XM_030474830.1 → XP_030330690.1  toll-like receptor 7

      UniProtKB/TrEMBL
      A0A672V4X9
      Conserved Domains (6) summary
      PRK15370
      Location:566 → 777
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      TIGR00864
      Location:751 → 838
      PCC; polycystin cation channel protein
      smart00255
      Location:888 → 1032
      TIR; Toll - interleukin 1 - resistance
      PLN00113
      Location:117 → 575
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:494 → 516
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:62 → 135
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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