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    Phxr4 per-hexamer repeat gene 4 [ Mus musculus (house mouse) ]

    Gene ID: 18689, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Phxr4provided by MGI
    Official Full Name
    per-hexamer repeat gene 4provided by MGI
    Primary source
    MGI:MGI:104522
    See related
    Ensembl:ENSMUSG00000031802 AllianceGenome:MGI:104522
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Sp5
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    Genomic context

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    See Phxr4 in Genome Data Viewer
    Location:
    9 A1; 9 3.13 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (13342657..13344047)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (13431361..13432751)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 82 Neighboring gene Jrk-like Neighboring gene predicted gene, 26189 Neighboring gene mastermind like transcriptional coactivator 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:13269708-13269915 Neighboring gene STARR-seq mESC enhancer starr_23332 Neighboring gene STARR-seq mESC enhancer starr_23333 Neighboring gene STARR-seq mESC enhancer starr_23334 Neighboring gene STARR-seq mESC enhancer starr_23335 Neighboring gene predicted gene, 51666 Neighboring gene VISTA enhancer mm1371 Neighboring gene predicted gene, 39291 Neighboring gene myotubularin related protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mouse spleen derived cDNA clones containing per repeat sequence. Nishimatsu S, et al. Nucleic Acids Res, 1988 Dec 23. PMID 3267239, Free PMC Article
    2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC130239, MGC130240

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028271.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC241616
      Related
      ENSMUST00000216590.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      13342657..13344047
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_008835.1: Suppressed sequence

      Description
      NM_008835.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P15974.1 GenPept UniProtKB/Swiss-Prot:P15974

    Gene LinkOut

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