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    Ccdc82 coiled-coil domain containing 82 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300359, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Ccdc82provided by RGD
    Official Full Name
    coiled-coil domain containing 82provided by RGD
    Primary source
    RGD:1359666
    See related
    EnsemblRapid:ENSRNOG00000005713 AllianceGenome:RGD:1359666
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be active in nucleus. Orthologous to human CCDC82 (coiled-coil domain containing 82). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 173.4), Spleen (RPKM 161.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc82 in Genome Data Viewer
    Location:
    8q11
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (18509293..18665008)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (10227727..10265963)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (11888460..11927920)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene U7 small nuclear RNA Neighboring gene JRK-like Neighboring gene mastermind-like transcriptional coactivator 2 Neighboring gene uncharacterized LOC134480140 Neighboring gene uncharacterized LOC120094078

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis. Na CH, et al. J Proteome Res, 2012 Sep 7. PMID 22871113, Free PMC Article
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC94183

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 82

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007660.1 → NP_001007661.1  coiled-coil domain-containing protein 82

      See identical proteins and their annotated locations for NP_001007661.1

      Status: PROVISIONAL

      Source sequence(s)
      BC081989
      UniProtKB/Swiss-Prot
      Q66H73
      UniProtKB/TrEMBL
      A0A8L2R8F3, A6JN69
      Conserved Domains (2) summary
      pfam13846
      Location:98 → 211
      DUF4196; Domain of unknown function (DUF4196)
      pfam13926
      Location:270 → 428
      DUF4211; Domain of unknown function (DUF4211)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      18509293..18665008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006242519.5 → XP_006242581.1  coiled-coil domain-containing protein 82 isoform X1

      See identical proteins and their annotated locations for XP_006242581.1

      UniProtKB/Swiss-Prot
      Q66H73
      UniProtKB/TrEMBL
      A0A8L2R8F3, A6JN69
      Related
      ENSRNOP00000037632.3, ENSRNOT00000037457.6
      Conserved Domains (2) summary
      pfam13846
      Location:98 → 211
      DUF4196; Domain of unknown function (DUF4196)
      pfam13926
      Location:270 → 428
      DUF4211; Domain of unknown function (DUF4211)

    2. XM_063265043.1 → XP_063121113.1  coiled-coil domain-containing protein 82 isoform X2

      Related
      ENSRNOP00000110175.1, ENSRNOT00000147330.1

    3. XM_039080984.2 → XP_038936912.1  coiled-coil domain-containing protein 82 isoform X3

      UniProtKB/TrEMBL
      A0A8L2R8F3
      Conserved Domains (2) summary
      pfam13846
      Location:98 → 211
      DUF4196; Domain of unknown function (DUF4196)
      pfam13926
      Location:270 → 421
      DUF4211; Domain of unknown function (DUF4211)

    RNA

    1. XR_010053938.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q66H73.1 GenPept UniProtKB/Swiss-Prot:Q66H73

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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