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    PLEKHM1P1 pleckstrin homology and RUN domain containing M1 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 440456, updated on 22-Oct-2024

    Summary

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    Official Symbol
    PLEKHM1P1provided by HGNC
    Official Full Name
    pleckstrin homology and RUN domain containing M1 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:35411
    See related
    Ensembl:ENSG00000293669 AllianceGenome:HGNC:35411
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PLEKHM1P
    Expression
    Ubiquitous expression in bone marrow (RPKM 24.7), skin (RPKM 11.0) and 24 other tissues See more
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    Genomic context

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    See PLEKHM1P1 in Genome Data Viewer
    Location:
    17q24.1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (64784841..64837184, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (65654594..65706942, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (62780959..62833302, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene Neighboring gene bromodomain PHD finger transcription factor pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:62773916-62774585 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:62774586-62775254 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8849 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8850 Neighboring gene Rho GTPase activating protein 27 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:62781097-62781856 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:62782294-62783493 Neighboring gene microRNA 6080 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:62794173-62794673 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:62817908-62818408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:62821718-62822218 Neighboring gene microRNA 4315-2 Neighboring gene RNA, U7 small nuclear 115 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8851 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8852 Neighboring gene uncharacterized LOC105371860 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12601 Neighboring gene uncharacterized LOC105376844 Neighboring gene leucine rich repeat containing 37 member A3 Neighboring gene ARF like GTPase 17A pseudogene Neighboring gene RNA, 7SL, cytoplasmic 404, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674
    2. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024386.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL833315, DA759804, KF456307
      Related
      ENST00000701190.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      64784841..64837184 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      65654594..65706942 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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