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    LOC100377560 transcription initiation protein SPT3 homolog [ Saccoglossus kowalevskii ]

    Gene ID: 100377560, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC100377560
    Gene description
    transcription initiation protein SPT3 homolog
    See related
    EnsemblRapid:LOC100377560
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Saccoglossus kowalevskii
    Lineage
    Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus
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    Genomic context

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    See LOC100377560 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current Skow_1.1 (GCF_000003605.2) Unplaced Scaffold NW_003112965.1 (117232..175293, complement)

    NW_003112965.1Genomic Context describing neighboring genes Neighboring gene dnaJ homolog subfamily B member 13-like Neighboring gene Fanconi anemia group E protein-like Neighboring gene runt-related transcription factor Neighboring gene arginyl-tRNA--protein transferase 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003112965 unplaced scaffold reference Skow_1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation protein SPT3 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Saccoglossus kowalevskii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Skow_1.1 Primary Assembly

    Genomic

    1. NW_003112965.1 Reference Skow_1.1 Primary Assembly

      Range
      117232..175293 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006813238.1 → XP_006813301.1  transcription initiation protein SPT3 homolog

      Related
      XP_006813301.1, XM_006813238.1
      Conserved Domains (1) summary
      cd07978
      Location:56 → 142
      TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    Nucleotide Protein
    Heading Accession and Version

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