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    LOC103629289 protein argonaute 1B [ Zea mays ]

    Gene ID: 103629289, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC103629289
    Gene description
    protein argonaute 1B
    Locus tag
    ZEAMMB73_Zm00001d035747
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    AGO1a; GRMZM2G441583
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    Genomic context

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    See LOC103629289 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 6 NC_050101.1 (51072742..51081330)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 6 NC_024464.2 (44780747..44789323)

    Chromosome 6 - NC_050101.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118472182 Neighboring gene uncharacterized LOC103631041 Neighboring gene uncharacterized LOC103629292 Neighboring gene uncharacterized LOC100278534

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulatory ncRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein argonaute 1B
    Names
    argonaute1a
    putative argonaute family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050101.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      51072742..51081330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008650457.3 → XP_008648679.1  protein argonaute 1B

      See identical proteins and their annotated locations for XP_008648679.1

      UniProtKB/TrEMBL
      A0A096TTL7, A0A0M3LA64
      Conserved Domains (3) summary
      PLN03202
      Location:217 → 1102
      PLN03202; protein argonaute; Provisional
      pfam09606
      Location:6 → 189
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12764
      Location:121 → 219
      Gly-rich_Ago1; Glycine-rich region of argonaut

    2. XM_035959915.1 → XP_035815808.1  protein argonaute 1B

      UniProtKB/TrEMBL
      A0A096TTL7, A0A0M3LA64
      Conserved Domains (3) summary
      PLN03202
      Location:217 → 1102
      PLN03202; protein argonaute; Provisional
      pfam09606
      Location:6 → 189
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12764
      Location:121 → 219
      Gly-rich_Ago1; Glycine-rich region of argonaut

    3. XM_008650459.3 → XP_008648681.1  protein argonaute 1B

      See identical proteins and their annotated locations for XP_008648681.1

      UniProtKB/TrEMBL
      A0A096TTL7, A0A0M3LA64
      Conserved Domains (3) summary
      PLN03202
      Location:217 → 1102
      PLN03202; protein argonaute; Provisional
      pfam09606
      Location:6 → 189
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12764
      Location:121 → 219
      Gly-rich_Ago1; Glycine-rich region of argonaut

    4. XM_008650458.4 → XP_008648680.1  protein argonaute 1B

      See identical proteins and their annotated locations for XP_008648680.1

      UniProtKB/TrEMBL
      A0A096TTL7, A0A0M3LA64
      Conserved Domains (3) summary
      PLN03202
      Location:217 → 1102
      PLN03202; protein argonaute; Provisional
      pfam09606
      Location:6 → 189
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12764
      Location:121 → 219
      Gly-rich_Ago1; Glycine-rich region of argonaut

    RNA

    1. XR_002263241.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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