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    MIR9471a microRNA MIR9471a [ Solanum lycopersicum (tomato) ]

    Gene ID: 104796546, updated on 1-Nov-2024

    Summary

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    Gene symbol
    MIR9471a
    Gene description
    microRNA MIR9471a
    See related
    miRBase:MI0029107
    Gene type
    ncRNA
    RefSeq status
    PROVISIONAL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    Also known as
    sly-MIR9471a
    Summary
    microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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    Genomic context

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    See MIR9471a in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 12 NC_090811.1 (2398394..2398574, complement)
    103 previous assembly SL3.0 (GCF_000188115.4) 12 NC_015449.3 (1977733..1977913, complement)

    Chromosome 12 - NC_090811.1Genomic Context describing neighboring genes Neighboring gene arginine--tRNA ligase, chloroplastic/mitochondrial Neighboring gene glucan endo-1,3-beta-glucosidase 13 Neighboring gene profilin-1 Neighboring gene microRNA MIR9471b Neighboring gene uncharacterized LOC101262285

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant. Kravchik M, et al. J Exp Bot, 2014 Feb. PMID 24376253, Free PMC Article
    2. miRBase: integrating microRNA annotation and deep-sequencing data. Kozomara A, et al. Nucleic Acids Res, 2011 Jan. PMID 21037258, Free PMC Article
    3. miRBase: microRNA sequences, targets and gene nomenclature. Griffiths-Jones S, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381832, Free PMC Article

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_130086.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AEKE03003148

    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090811.1 Reference SLM_r2.1 Primary Assembly

      Range
      2398394..2398574 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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