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    KIAA0087 KIAA0087 lncRNA [ Homo sapiens (human) ]

    Gene ID: 9808, updated on 10-Oct-2023

    Summary

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    Official Symbol
    KIAA0087provided by HGNC
    Official Full Name
    KIAA0087 lncRNAprovided by HGNC
    Primary source
    HGNC:HGNC:22191
    See related
    Ensembl:ENSG00000122548 AllianceGenome:HGNC:22191
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See KIAA0087 in Genome Data Viewer
    Location:
    7p15.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (26533121..26538825, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (26668807..26674506, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (26572740..26578444, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene sorting nexin 10 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18038 Neighboring gene SNX10 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:26437325-26438281 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18040 Neighboring gene long intergenic non-protein coding RNA 2981 Neighboring gene NANOG hESC enhancer GRCh37_chr7:26455397-26455952 Neighboring gene uncharacterized LOC105375202 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:26480672-26481247 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:26481248-26481822 Neighboring gene VISTA enhancer hs769 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26547862-26548362 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26548363-26548863 Neighboring gene uncharacterized LOC124901605 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:26589438-26590637 Neighboring gene long intergenic non-protein coding RNA 3095

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Distinct expression profile of lncRNA in endometrial carcinoma. Xu J, et al. Oncol Rep, 2016 Dec. PMID 27748922
    2. Prediction of the coding sequences of unidentified human genes. III. The coding sequences of 40 new genes (KIAA0081-KIAA0120) deduced by analysis of cDNA clones from human cell line KG-1. Nagase T, et al. DNA Res, 1995. PMID 7788527
    3. DCAF8, a novel MuRF1 interaction partner, promotes muscle atrophy. Nowak M, et al. J Cell Sci, 2019 Sep 6. PMID 31391242
    4. Human chromosome 7: DNA sequence and biology. Scherer SW, et al. Science, 2003 May 2. PMID 12690205, Free PMC Article
    5. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LncRNA KIAA0087 suppresses the progression of osteosarcoma by mediating the SOCS1/JAK2/STAT3 signaling pathway.
      Title: LncRNA KIAA0087 suppresses the progression of osteosarcoma by mediating the SOCS1/JAK2/STAT3 signaling pathway.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_022006.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AC004947, BC128257, DB147006
      Related
      ENST00000242109.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      26533121..26538825 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      26668807..26674506 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_014769.1: Suppressed sequence

      Description
      NM_014769.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q14695.1 GenPept UniProtKB/Swiss-Prot:Q14695

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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