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    SNR47 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164877, updated on 2-Nov-2024

    Summary

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    Official Symbol
    SNR47
    Primary source
    SGD:S000006507
    Locus tag
    YNCD0010C
    See related
    AllianceGenome:SGD:S000006507
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables rRNA 2'-O-ribose methylation guide activity. Involved in rRNA methylation. Predicted to be located in nucleolus. Predicted to be part of box C/D methylation guide snoRNP complex. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See SNR47 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    1
    Sequence:
    Chromosome: IV; NC_001136.10 (541602..541700, complement)

    Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene mitochondrial 37S ribosomal protein RSM10 Neighboring gene uncharacterized protein Neighboring gene transcriptional regulator NRG1 Neighboring gene coproporphyrinogen oxidase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001136.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Intrinsic dynamics of an extended hydrophobic core in the S. cerevisiae RNase III dsRBD contributes to recognition of specific RNA binding sites. Hartman E, et al. J Mol Biol, 2013 Feb 8. PMID 23201338, Free PMC Article
    2. Structural insights into cis element recognition of non-polyadenylated RNAs by the Nab3-RRM. Lunde BM, et al. Nucleic Acids Res, 2011 Jan. PMID 20805243, Free PMC Article
    3. Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III. Wu H, et al. Proc Natl Acad Sci U S A, 2004 Jun 1. PMID 15150409, Free PMC Article
    4. Solution structure of conserved AGNN tetraloops: insights into Rnt1p RNA processing. Lebars I, et al. EMBO J, 2001 Dec 17. PMID 11743001, Free PMC Article
    5. Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts. Carroll KL, et al. Mol Cell Biol, 2004 Jul. PMID 15226427, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • C/D box small nucleolar RNA (snoRNA); guides 2'-O-methylation of large subunit (LSU) rRNA at position A2220 and small subunit (SSU) rRNA at position A619

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables rRNA 2'-O-ribose methylation guide activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables rRNA 2'-O-ribose methylation guide activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA methylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in rRNA methylation ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box C/D methylation guide snoRNP complex IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleolus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001136.10 Reference assembly

      Range
      541602..541700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132160.1 RNA Sequence

      Status: REVIEWED

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