U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    ub3 unbranched 3 [ Zea mays ]

    Gene ID: 103654498, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    ub3
    Gene description
    unbranched 3
    Locus tag
    ZEAMMB73_Zm00001d052890
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    sbp7; GRMZM2G460544
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ub3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (205414260..205418744, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (203611345..203615828, complement)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene IRK-interacting protein Neighboring gene lysine-specific demethylase JMJ30-like Neighboring gene polygalacturonase inhibitor 1 Neighboring gene uncharacterized LOC109945615

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. UNBRANCHED3 regulates branching by modulating cytokinin biosynthesis and signaling in maize and rice. Du Y, et al. New Phytol, 2017 Apr. PMID 28040882
    2. Maize SBP-box transcription factors unbranched2 and unbranched3 affect yield traits by regulating the rate of lateral primordia initiation. Chuck GS, et al. Proc Natl Acad Sci U S A, 2014 Dec 30. PMID 25512525, Free PMC Article
    3. Molecular characterisation of the Arabidopsis SBP-box genes. Cardon G, et al. Gene, 1999 Sep 3. PMID 10524240
    4. Functional analysis of the Arabidopsis thaliana SBP-box gene SPL3: a novel gene involved in the floral transition. Cardon GH, et al. Plant J, 1997 Aug. PMID 9301089
    5. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These results suggest that UB3 regulates vegetative and reproductive branching by modulating cytokinin biosynthesis and signaling in maize and rice.
      Title: UNBRANCHED3 regulates branching by modulating cytokinin biosynthesis and signaling in maize and rice.
    2. Uniform Mu insertion results in up-regulation of cytokinin synthesis genes and down-regulation of cytokinin degradation genes. The protein binds to Gene:103632693, Gene:100502174, Gene:100283866, Gene:542044, and Gene:100037786.
      Title: UNBRANCHED3 regulates branching by modulating cytokinin biosynthesis and signaling in maize and rice.
    3. Regulates the rate of of lateral primordia initiation.
      Title: Maize SBP-box transcription factors unbranched2 and unbranched3 affect yield traits by regulating the rate of lateral primordia initiation.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    unbranched3
    Names
    SBP-domain protein 7
    Squamosa promoter-binding-like protein 15
    squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
    squamosa promoter-binding-like protein 14

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001301523.1 → NP_001288452.1  unbranched3

      See identical proteins and their annotated locations for NP_001288452.1

      Status: PROVISIONAL

      Source sequence(s)
      BT054334
      UniProtKB/TrEMBL
      A0A804P0G1, B7ZYE2
      Conserved Domains (1) summary
      pfam03110
      Location:88 → 157
      SBP; SBP domain

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      205414260..205418744 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008681329.4 → XP_008679551.1  unbranched3 isoform X3

      UniProtKB/TrEMBL
      A0A804P0G1
      Conserved Domains (1) summary
      pfam03110
      Location:88 → 157
      SBP; SBP domain

    2. XM_008681328.4 → XP_008679550.1  unbranched3 isoform X2

      UniProtKB/TrEMBL
      A0A804P0G1, A0A804P0G3
      Conserved Domains (1) summary
      pfam03110
      Location:88 → 157
      SBP; SBP domain

    3. XM_008681327.4 → XP_008679549.1  unbranched3 isoform X1

      UniProtKB/TrEMBL
      A0A804P0G1, A0A804P0G2
      Conserved Domains (1) summary
      pfam03110
      Location:88 → 157
      SBP; SBP domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials