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    LOC101391406 attractin like 1 [ Ceratotherium simum simum (southern white rhinoceros) ]

    Gene ID: 101391406, updated on 8-Mar-2024

    Summary

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    Gene symbol
    LOC101391406
    Gene description
    attractin like 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ceratotherium simum simum (sub-species: simum)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Ceratotherium
    Also known as
    ATRNL1
    Orthologs
    human mouse all
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    Genomic context

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    See LOC101391406 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    101 current CerSimSim1.0 (GCF_000283155.1) Unplaced Scaffold NW_004454179.1 (22842250..23621403)

    NW_004454179.1Genomic Context describing neighboring genes Neighboring gene FHF complex subunit HOOK interacting protein 2A Neighboring gene TruB pseudouridine synthase family member 1 Neighboring gene GDNF family receptor alpha 1 Neighboring gene coiled-coil domain containing 172

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004454179.1 Unplaced Scaffold Reference CerSimSim1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    attractin-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ceratotherium simum simum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CerSimSim1.0 Primary Assembly

    Genomic

    1. NW_004454179.1 Reference CerSimSim1.0 Primary Assembly

      Range
      22842250..23621403
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004428173.2 → XP_004428230.1  attractin-like protein 1

      Conserved Domains (8) summary
      cd03597
      Location:951 → 1077
      CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
      cd00041
      Location:296 → 411
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1216 → 1261
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:724 → 777
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:1092 → 1141
      PSI; Plexin repeat
      pfam13418
      Location:671 → 717
      Kelch_4; Galactose oxidase, central domain
      pfam13854
      Location:555 → 595
      Kelch_5; Kelch motif
      cl19567
      Location:438 → 483
      DSL; Delta serrate ligand
    Nucleotide Protein
    Heading Accession and Version

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