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    LOC107075894 baculoviral IAP repeat-containing protein 1a-like [ Lepisosteus oculatus (spotted gar) ]

    Gene ID: 107075894, updated on 19-Jun-2024

    Summary

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    Gene symbol
    LOC107075894
    Gene description
    baculoviral IAP repeat-containing protein 1a-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lepisosteus oculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
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    Genomic context

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    See LOC107075894 in Genome Data Viewer
    Location:
    chromosome: LG28
    Exon count:
    9
    Annotation release Status Assembly LG Location
    101 current LepOcu1 (GCF_000242695.1) LG28 NC_023206.1 (4181142..4201556, complement)

    Linkage Group LG28 - NC_023206.1Genomic Context describing neighboring genes Neighboring gene proteinase-activated receptor 3-like Neighboring gene neuritin-like Neighboring gene G-protein coupled receptor 4-like Neighboring gene G-protein coupled receptor 4-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_023206.1 Chromosome LG28 Reference LepOcu1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase inhibitor activity involved in apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to bacterium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in detection of bacterium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of cysteine-type endopeptidase activity involved in apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pyroptotic inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of IPAF inflammasome complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    baculoviral IAP repeat-containing protein 1a-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LepOcu1 Primary Assembly

    Genomic

    1. NC_023206.1 Reference LepOcu1 Primary Assembly

      Range
      4181142..4201556 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015338903.1 → XP_015194389.1  baculoviral IAP repeat-containing protein 1a-like

      Conserved Domains (4) summary
      smart00238
      Location:161 → 223
      BIR; Baculoviral inhibition of apoptosis protein repeat
      cd00022
      Location:64 → 131
      BIR; Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. ...
      cd00116
      Location:378 → 503
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00034
      Location:394 → 422
      LRR_AMN1; leucine-rich repeat [structural motif]
    Nucleotide Protein
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