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    nbc sodium bicarbonate cotransporter [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 100135987, updated on 14-Dec-2023

    Summary

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    Gene symbol
    nbc
    Gene description
    sodium bicarbonate cotransporter
    See related
    Ensembl:ENSOMYG00000040169
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See nbc in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 5 NC_048569.1 (17598908..17688319, complement)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) 5 NC_035081.1 (14767816..14849814, complement)

    Chromosome 5 - NC_048569.1Genomic Context describing neighboring genes Neighboring gene probable global transcription activator SNF2L2 Neighboring gene neuropeptide FF receptor 2 Neighboring gene MOB kinase activator 1B Neighboring gene deoxycytidine kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables monoatomic anion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sodium:bicarbonate symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables solute:inorganic anion antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in bicarbonate transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic anion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of intracellular pH IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basolateral plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sodium bicarbonate cotransporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001124325.1 → NP_001117797.1  sodium bicarbonate cotransporter

      See identical proteins and their annotated locations for NP_001117797.1

      Status: PROVISIONAL

      Source sequence(s)
      AF434166
      UniProtKB/TrEMBL
      A0A8C7TWB5, Q8AYH7
      Related
      ENSOMYP00000088908.2, ENSOMYT00000096825.2
      Conserved Domains (3) summary
      TIGR00834
      Location:116 → 1010
      ae; anion exchange protein
      pfam00955
      Location:449 → 963
      HCO3_cotransp; HCO3- transporter family
      pfam07565
      Location:150 → 394
      Band_3_cyto; Band 3 cytoplasmic domain

    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_048569.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      17598908..17688319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036976497.1 → XP_036832392.1  sodium bicarbonate cotransporter isoform X1

      UniProtKB/TrEMBL
      A0A8C7TWB5, A0A8C7U0V2
      Related
      ENSOMYP00000088852.2, ENSOMYT00000096766.2
      Conserved Domains (1) summary
      cl26877
      Location:115 → 1057
      Band_3_cyto; Band 3 cytoplasmic domain
    Nucleotide Protein
    Heading Accession and Version

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