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    LOC124416938 cyclin-dependent kinase C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 124416938, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC124416938
    Gene description
    cyclin-dependent kinase C
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CDKC1; CDKC-2; CDKC;2; OsJ_04825; OJ1294_F06.25
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    Genomic context

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    See LOC124416938 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (42881763..42884795)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene zealexin A1 synthase Neighboring gene ribosomal RNA-processing protein 12 Neighboring gene cell division protein FtsY homolog, chloroplastic Neighboring gene EP1-like glycoprotein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_089035.1 Chromosome 1 Reference ASM3414082v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Kawahara Y, et al. Rice (N Y), 2013 Feb 6. PMID 24280374, Free PMC Article
    2. Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics. Sakai H, et al. Plant Cell Physiol, 2013 Feb. PMID 23299411, Free PMC Article
    3. The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan. PMID 18089549, Free PMC Article
    4. Genome-wide identification and expression analysis of rice cell cycle genes. Guo J, et al. Plant Mol Biol, 2007 Jul. PMID 17443292
    5. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11. PMID 16100779

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II CTD heptapeptide repeat kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cyclin-dependent protein kinase holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-dependent kinase C-2
    Names
    Cyclin-dependent kinase C-2
    LOC_Os01g72790
    putative cdc2-like protein kinase cdc2MsC
    NP_001388757.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401828.1 → NP_001388757.1  cyclin-dependent kinase C-2

      Status: VALIDATED

      Source sequence(s)
      AK103469, CI246815, CI288959, CI308363, CI639784
      UniProtKB/Swiss-Prot
      B9EWJ5, Q5JK68, Q5K4U5, Q7Y0V2
      UniProtKB/TrEMBL
      B8A9I9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      42881763..42884795
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5JK68.1 GenPept UniProtKB/Swiss-Prot:Q5JK68

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases