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    LOC100282267 actin 1 [ Zea mays ]

    Gene ID: 100282267, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC100282267
    Gene description
    actin 1
    Locus tag
    ZEAMMB73_Zm00001d010159
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    act1; ACT-1; actin; Actin-1; GRMZM2G126010
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    Genomic context

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    See LOC100282267 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 8 NC_050103.1 (102332780..102336553, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 8 NC_024466.2 (102413768..102417536, complement)

    Chromosome 8 - NC_050103.1Genomic Context describing neighboring genes Neighboring gene glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic/amyloplastic/cytosolic-like Neighboring gene uncharacterized LOC109941409 Neighboring gene probable dual-specificity RNA methyltransferase RlmN Neighboring gene uncharacterized LOC100274588

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
    2. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    actin-1
    Names
    PCO080070
    bnl(act1)
    npi368(act1)
    pMac1
    phi115

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001155179.2 → NP_001148651.2  actin-1

      Status: VALIDATED

      Source sequence(s)
      BM418185, BT039000, GECS01000141, GJCA01036087
      UniProtKB/TrEMBL
      A0A3L6DU51, B4FPG2, B6T5K6

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050103.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      102332780..102336553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008656735.3 → XP_008654957.1  actin-1 isoform X1

      See identical proteins and their annotated locations for XP_008654957.1

      UniProtKB/TrEMBL
      A0A3L6DU51, B4FPG2, B6T5K6
      Conserved Domains (1) summary
      cl17037
      Location:1 → 376
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P02582.1 GenPept UniProtKB/Swiss-Prot:P02582

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials