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    AT5G67540 Arabinanase/levansucrase/invertase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836890, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT5G67540
    Gene description
    Arabinanase/levansucrase/invertase
    Primary source
    Araport:AT5G67540
    Locus tag
    AT5G67540
    See related
    TAIR:AT5G67540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K9I9.10; K9I9_10
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    Genomic context

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    See AT5G67540 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (26944028..26946377, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene voltage dependent anion channel 2 Neighboring gene Translation protein SH3-like family protein Neighboring gene adenosine-5'-phosphosulfate (APS) kinase 4 Neighboring gene plant U-box 49 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Golgi-localized exo-β1,3-galactosidases involved in cell expansion and root growth in Arabidopsis. Nibbering P, et al. J Biol Chem, 2020 Jul 31. PMID 32493777, Free PMC Article
    2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001345836.1
    NM_126154.4
    NM_203279.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables beta-galactosidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within classical arabinogalactan protein metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Arabinanase/levansucrase/invertase
    NP_201555.2
    • Arabinanase/levansucrase/invertase; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 43 (InterPro:IPR006710); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 43 (TAIR:AT3G49880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_975008.1
    • Arabinanase/levansucrase/invertase; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 43 (InterPro:IPR006710); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 43 (TAIR:AT3G49880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26944028..26946377 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126154.4 → NP_201555.2  Arabinanase/levansucrase/invertase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201555.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YHY0, A0A7G2FQM9, Q8W1E6
      Conserved Domains (1) summary
      cd18825
      Location:153 → 435
      GH43_CtGH43-like; Glycosyl hydrolase family 43 protein similar to Clostridium thermocellum exo-beta-1,3-galactanase CtGH43 and Ruminococcus champanellensis arabinanase Ara43A

    2. NM_203279.2 → NP_975008.1  Arabinanase/levansucrase/invertase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_975008.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIT2, Q9FJW9
      Conserved Domains (1) summary
      cd08985
      Location:158 → 440
      GH43_6; Glycosyl hydrolase family 43

    3. NM_001345836.1 → NP_001331292.1  Arabinanase/levansucrase/invertase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIT2, A0A1P8BDH2
    Nucleotide Protein
    Heading Accession and Version

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