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    LOC105935996 ras-related protein Rap-1A [ Fundulus heteroclitus (mummichog) ]

    Gene ID: 105935996, updated on 20-Aug-2024

    Summary

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    Gene symbol
    LOC105935996
    Gene description
    ras-related protein Rap-1A
    See related
    EnsemblRapid:ENSFHEG00000023598
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Fundulus heteroclitus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
    Also known as
    rap1a
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    Genomic context

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    See LOC105935996 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 20 NC_046380.1 (14114043..14142539, complement)
    101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234439.1 (796087..820274, complement)

    Chromosome 20 - NC_046380.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily D member 3 Neighboring gene inka box actin regulator 2 Neighboring gene uncharacterized LOC118567144 Neighboring gene translocase of inner mitochondrial membrane 17 homolog A (yeast) Neighboring gene leiomodin 1b (smooth muscle)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GDP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Rap protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to cAMP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of synaptic vesicle exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ras-related protein Rap-1A
    Names
    RAP1A, member of RAS oncogene family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MU-UCD_Fhet_4.1 Primary Assembly

    Genomic

    1. NC_046380.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

      Range
      14114043..14142539 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036151477.1 → XP_036007370.1  ras-related protein Rap-1A

      UniProtKB/TrEMBL
      A0A146NAY3, A0A3Q2TG54
      Related
      ENSFHEP00000051095.1, ENSFHET00000061619.1
      Conserved Domains (1) summary
      cd04175
      Location:3 → 167
      Rap1; Rap1 family GTPase consists of Rap1a and Rap1b isoforms

    2. XM_036151478.1 → XP_036007371.1  ras-related protein Rap-1A

      UniProtKB/TrEMBL
      A0A146NAY3, A0A3Q2TG54
      Conserved Domains (1) summary
      cd04175
      Location:3 → 167
      Rap1; Rap1 family GTPase consists of Rap1a and Rap1b isoforms
    Nucleotide Protein
    Heading Accession and Version

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