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    LOC103321183 high mobility group B protein 9 [ Prunus mume (Japanese apricot) ]

    Gene ID: 103321183, updated on 28-Dec-2023

    Summary

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    Gene symbol
    LOC103321183
    Gene description
    high mobility group B protein 9
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prunus mume
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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    Genomic context

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    See LOC103321183 in Genome Data Viewer
    Location:
    chromosome: LG2
    Exon count:
    6
    Annotation release Status Assembly LG Location
    101 current P.mume_V1.0 (GCF_000346735.1) LG2 NC_024127.1 (15082704..15086343)

    Linkage Group LG2 - NC_024127.1Genomic Context describing neighboring genes Neighboring gene ganglioside-induced differentiation-associated protein 2-like Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene U11/U12 small nuclear ribonucleoprotein 25 kDa protein Neighboring gene glutathione S-transferase Neighboring gene mediator of RNA polymerase II transcription subunit 30

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_024127.1 Chromosome LG2 Reference P.mume_V1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    high mobility group B protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prunus mume Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.mume_V1.0 Primary Assembly

    Genomic

    1. NC_024127.1 Reference P.mume_V1.0 Primary Assembly

      Range
      15082704..15086343
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016792605.1 → XP_016648091.1  high mobility group B protein 9 isoform X1

    2. XM_008222968.2 → XP_008221190.1  high mobility group B protein 9 isoform X2

      Conserved Domains (2) summary
      smart00501
      Location:30 → 121
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
      cd01390
      Location:247 → 311
      HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    Nucleotide Protein
    Heading Accession and Version

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