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    LOC103323269 structure-specific endonuclease subunit SLX1 homolog [ Prunus mume (Japanese apricot) ]

    Gene ID: 103323269, updated on 28-Dec-2023

    Summary

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    Gene symbol
    LOC103323269
    Gene description
    structure-specific endonuclease subunit SLX1 homolog
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prunus mume
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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    Genomic context

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    See LOC103323269 in Genome Data Viewer
    Location:
    chromosome: LG2
    Exon count:
    5
    Annotation release Status Assembly LG Location
    101 current P.mume_V1.0 (GCF_000346735.1) LG2 NC_024127.1 (33295982..33303629)

    Linkage Group LG2 - NC_024127.1Genomic Context describing neighboring genes Neighboring gene calmodulin-binding transcription activator 2-like Neighboring gene methyltransferase-like protein 13 Neighboring gene mediator of RNA polymerase II transcription subunit 21-like Neighboring gene uncharacterized LOC103323252 Neighboring gene ATP-citrate synthase alpha chain protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_024127.1 Chromosome LG2 Reference P.mume_V1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-flap endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables crossover junction DNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Slx1-Slx4 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    structure-specific endonuclease subunit SLX1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prunus mume Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.mume_V1.0 Primary Assembly

    Genomic

    1. NC_024127.1 Reference P.mume_V1.0 Primary Assembly

      Range
      33295982..33303629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016792614.1 → XP_016648100.1  structure-specific endonuclease subunit SLX1 homolog

    2. XM_016792613.1 → XP_016648099.1  structure-specific endonuclease subunit SLX1 homolog

    3. XM_016792612.1 → XP_016648098.1  structure-specific endonuclease subunit SLX1 homolog

    Nucleotide Protein
    Heading Accession and Version

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