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    AT4G32460 choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829381, updated on 20-Nov-2023

    Summary

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    Gene symbol
    AT4G32460
    Gene description
    choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
    Primary source
    Araport:AT4G32460
    Locus tag
    AT4G32460
    See related
    TAIR:AT4G32460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8B4.160; F8B4_160
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    Genomic context

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    See AT4G32460 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (15662266..15665032, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Plant Tudor-like RNA-binding protein Neighboring gene miscRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Cytochrome bd ubiquinol oxidase, 14kDa subunit Neighboring gene tRNA-Gly

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BIIDXI, a DUF642 Cell Wall Protein That Regulates Pectin Methyl Esterase Activity, Is Involved in Thermotolerance Processes in Arabidopsis thaliana. Pineda-Hernández E, et al. Plants (Basel), 2022 Nov 11. PMID 36432778, Free PMC Article
    2. BIIDXI, a DUF642 cell wall protein, is involved in hypocotyl growth via auxin efflux. Salazar-Iribe A, et al. J Plant Physiol, 2018 Dec. PMID 30253266
    3. Degree of pectin methyl esterification in endosperm cell walls is involved in embryo bending in Arabidopsis thaliana. Cruz-Valderrama JE, et al. Biochem Biophys Res Commun, 2018 Jan 1. PMID 29137987
    4. BIIDXI, the At4g32460 DUF642 gene, is involved in pectin methyl esterase regulation during Arabidopsis thaliana seed germination and plant development. Zúñiga-Sánchez E, et al. BMC Plant Biol, 2014 Dec 2. PMID 25442819, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. involved in hypocotyl elongation through the regulation of auxin flux. [BIIDXI]
      Title: BIIDXI, a DUF642 cell wall protein, is involved in hypocotyl growth via auxin efflux.
    2. Transgenic lines overexpressing the DUF642 proteins encoded by At4g32460 and At5g11420 showed increased pectin methyl esterase 3 activity during seed germination, and improved seed germination performance.
      Title: BIIDXI, the At4g32460 DUF642 gene, is involved in pectin methyl esterase regulation during Arabidopsis thaliana seed germination and plant development.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001342152.1
    NM_001342153.1
    NM_119398.4
    NM_202932.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables enzyme regulator activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in embryonic morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pectin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of seed germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of cell wall pectin metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in reproductive structure development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to gibberellin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to nematode IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
    NP_567894.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G11420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974661.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G11420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15662266..15665032 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202932.1 → NP_974661.1  choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974661.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWU1, Q8LAR0, Q9SUU6
      UniProtKB/TrEMBL
      A0A178V5J0, A0A5S9XXY2
      Conserved Domains (1) summary
      PLN03089
      Location:1 → 365
      PLN03089; hypothetical protein; Provisional

    2. NM_119398.4 → NP_567894.1  choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567894.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWU1, Q8LAR0, Q9SUU6
      UniProtKB/TrEMBL
      A0A178V5J0, A0A5S9XXY2
      Conserved Domains (1) summary
      PLN03089
      Location:1 → 365
      PLN03089; hypothetical protein; Provisional

    3. NM_001342152.1 → NP_001329630.1  choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XXY2, A0A7G2F2P3
      Conserved Domains (1) summary
      PLN03089
      Location:1 → 325
      PLN03089; hypothetical protein; Provisional

    4. NM_001342153.1 → NP_001329631.1  choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XXY2, A0A7G2F2P3
      Conserved Domains (1) summary
      PLN03089
      Location:1 → 325
      PLN03089; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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