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    Cimip4 ciliary microtubule inner protein 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 686841, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Cimip4provided by RGD
    Official Full Name
    ciliary microtubule inner protein 4provided by RGD
    Primary source
    RGD:1592508
    See related
    EnsemblRapid:ENSRNOG00000063601 AllianceGenome:RGD:1592508
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Tex33
    Summary
    Predicted to be located in sperm flagellum. Orthologous to human CIMIP4 (ciliary microtubule inner protein 4). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward (RPKM 547.9) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cimip4 in Genome Data Viewer
    Location:
    7q34
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (111808669..111825522, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (109928165..109944994, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (119598061..119613175, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene neutrophil cytosolic factor 4 Neighboring gene colony stimulating factor 2 receptor subunit beta Neighboring gene uncharacterized LOC120093821 Neighboring gene thiosulfate sulfurtransferase Neighboring gene mercaptopyruvate sulfurtransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The novel testicular enrichment protein Cfap58 is required for Notch-associated ciliogenesis. Li ZZ, et al. Biosci Rep, 2020 Jan 31. PMID 31904090, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in sperm flagellum ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    ciliary microtubule inner protein 4
    Names
    testis expressed 33
    testis-expressed protein 33

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044289.1 → NP_001037754.1  ciliary microtubule inner protein 4

      See identical proteins and their annotated locations for NP_001037754.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079191
      UniProtKB/TrEMBL
      A0A0G2K1D1, Q6AY51
      Related
      ENSRNOP00000085941.1, ENSRNOT00000113683.2
      Conserved Domains (1) summary
      pfam15400
      Location:128 → 264
      TEX33; Testis-expressed sequence 33 protein family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      111808669..111825522 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039079912.2 → XP_038935840.1  ciliary microtubule inner protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K1D1, Q6AY51
      Conserved Domains (1) summary
      pfam15400
      Location:128 → 264
      TEX33; Testis-expressed sequence 33 protein family

    2. XM_039079913.2 → XP_038935841.1  ciliary microtubule inner protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A0G2K1D1
      Conserved Domains (1) summary
      pfam15400
      Location:109 → 245
      TEX33; Testis-expressed sequence 33 protein family
    Nucleotide Protein Strain
    Heading Accession and Version

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    Chemical Information
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    Research Materials