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    CLP1 cleavage factor polyribonucleotide kinase subunit 1 [ Phascolarctos cinereus (koala) ]

    Gene ID: 110199481, updated on 11-Apr-2024

    Summary

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    Gene symbol
    CLP1
    Gene description
    cleavage factor polyribonucleotide kinase subunit 1
    See related
    Ensembl:ENSPCIG00000011899
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phascolarctos cinereus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
    Orthologs
    human mouse all
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    Genomic context

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    See CLP1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344207.1 (3240111..3247415)

    NW_018344207.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110199484 Neighboring gene uncharacterized LOC110199483 Neighboring gene yippee like 4 Neighboring gene zinc finger DHHC-type palmitoyltransferase 5 Neighboring gene mediator complex subunit 19

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018344207 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polynucleotide 5'-hydroxyl-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyribonucleotide 5'-hydroxyl-kinase Clp1
    Names
    cleavage and polyadenylation factor I subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference phaCin_unsw_v4.1 Primary Assembly

    Genomic

    1. NW_018344207.1 Reference phaCin_unsw_v4.1 Primary Assembly

      Range
      3240111..3247415
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020974362.1 → XP_020830021.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1

      UniProtKB/TrEMBL
      A0A6P5J7A6
      Conserved Domains (2) summary
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
      cl25635
      Location:14 → 423
      CLP1_N; N-terminal beta-sandwich domain of polyadenylation factor

    2. XM_020974357.1 → XP_020830016.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1

      UniProtKB/TrEMBL
      A0A6P5J7A6
      Conserved Domains (2) summary
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
      cl25635
      Location:14 → 423
      CLP1_N; N-terminal beta-sandwich domain of polyadenylation factor

    3. XM_020974366.1 → XP_020830025.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X2

      UniProtKB/TrEMBL
      A0A6P5J7B0
      Related
      ENSPCIP00000049788.1, ENSPCIT00000058422.1
      Conserved Domains (2) summary
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
      cl25635
      Location:14 → 423
      CLP1_N; N-terminal beta-sandwich domain of polyadenylation factor

    4. XM_020974358.1 → XP_020830017.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1

      UniProtKB/TrEMBL
      A0A6P5J7A6
      Conserved Domains (2) summary
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
      cl25635
      Location:14 → 423
      CLP1_N; N-terminal beta-sandwich domain of polyadenylation factor

    5. XM_020974363.1 → XP_020830022.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1

      UniProtKB/TrEMBL
      A0A6P5J7A6
      Conserved Domains (2) summary
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
      cl25635
      Location:14 → 423
      CLP1_N; N-terminal beta-sandwich domain of polyadenylation factor

    6. XM_020974365.1 → XP_020830024.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1

      UniProtKB/TrEMBL
      A0A6P5J7A6
      Related
      ENSPCIP00000015294.1, ENSPCIT00000018905.2
      Conserved Domains (2) summary
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
      cl25635
      Location:14 → 423
      CLP1_N; N-terminal beta-sandwich domain of polyadenylation factor

    7. XM_020974360.1 → XP_020830019.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1

      UniProtKB/TrEMBL
      A0A6P5J7A6
      Conserved Domains (2) summary
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
      cl25635
      Location:14 → 423
      CLP1_N; N-terminal beta-sandwich domain of polyadenylation factor

    8. XM_020974359.1 → XP_020830018.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1

      UniProtKB/TrEMBL
      A0A6P5J7A6
      Conserved Domains (2) summary
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
      cl25635
      Location:14 → 423
      CLP1_N; N-terminal beta-sandwich domain of polyadenylation factor

    9. XM_020974361.1 → XP_020830020.1  polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1

      UniProtKB/TrEMBL
      A0A6P5J7A6
      Conserved Domains (2) summary
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
      cl25635
      Location:14 → 423
      CLP1_N; N-terminal beta-sandwich domain of polyadenylation factor
    Nucleotide Protein
    Heading Accession and Version

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