U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    Prf1 perforin 1 [ Mus caroli (Ryukyu mouse) ]

    Gene ID: 110304002, updated on 15-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Prf1
    Gene description
    perforin 1
    See related
    Ensembl:MGP_CAROLIEiJ_G0015364
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus caroli
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Prf1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 10 NC_034579.1 (55791935..55799097)

    Chromosome 10 - NC_034579.1Genomic Context describing neighboring genes Neighboring gene thymus, brain and testes associated Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 14 Neighboring gene phosphatase domain containing paladin 1 Neighboring gene nodal growth differentiation factor

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_034579.1 Chromosome 10 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pore-forming activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in leukocyte mediated cytotoxicity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    perforin-1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAROLI_EIJ_v1.1 Primary Assembly

    Genomic

    1. NC_034579.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

      Range
      55791935..55799097
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021175251.2 → XP_021030910.1  perforin-1

      UniProtKB/TrEMBL
      A0A6P5QJV6
      Related
      MGP_CAROLIEiJ_P0023051, MGP_CAROLIEiJ_T0023051.1
      Conserved Domains (2) summary
      cd04032
      Location:387 → 513
      C2_Perforin; C2 domain of Perforin
      smart00457
      Location:166 → 368
      MACPF; membrane-attack complex / perforin
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.