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    LOC110452759 N-chimaerin-like [ Mizuhopecten yessoensis (Yesso scallop) ]

    Gene ID: 110452759, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC110452759
    Gene description
    N-chimaerin-like
    Locus tag
    KP79_PYT04667
    See related
    EnsemblRapid:LOC110452759
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mizuhopecten yessoensis
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Mizuhopecten
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    Genomic context

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    See LOC110452759 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current ASM211388v2 (GCF_002113885.1) Unplaced Scaffold NW_018406762.1 (1197142..1286023)

    NW_018406762.1Genomic Context describing neighboring genes Neighboring gene cell death specification protein 2-like Neighboring gene activin receptor type-2B-like Neighboring gene uncharacterized LOC110452787 Neighboring gene transcription intermediary factor 1-beta-like Neighboring gene uncharacterized LOC110452773

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018406762 Unplaced Scaffold Reference ASM211388v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    N-chimaerin-like
    Names
    N-chimaerin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mizuhopecten yessoensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM211388v2 Primary Assembly

    Genomic

    1. NW_018406762.1 Reference ASM211388v2 Primary Assembly

      Range
      1197142..1286023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021501426.1 → XP_021357101.1  N-chimaerin-like isoform X1

      Related
      XP_021357101.1, XM_021501426.1
      Conserved Domains (3) summary
      pfam00130
      Location:256 → 305
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      cl02570
      Location:316 → 511
      RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
      cl15255
      Location:79 → 163
      SH2; Src homology 2 (SH2) domain

    2. XM_021501433.1 → XP_021357108.1  N-chimaerin-like isoform X2

      UniProtKB/TrEMBL
      A0A210QIW3
      Related
      XP_021357108.1, XM_021501433.1
      Conserved Domains (3) summary
      pfam00130
      Location:243 → 292
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      cl02570
      Location:303 → 498
      RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
      cl15255
      Location:66 → 150
      SH2; Src homology 2 (SH2) domain

    3. XM_021501427.1 → XP_021357102.1  N-chimaerin-like isoform X1

      Related
      XP_021357102.1, XM_021501427.1
      Conserved Domains (3) summary
      pfam00130
      Location:256 → 305
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      cl02570
      Location:316 → 511
      RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
      cl15255
      Location:79 → 163
      SH2; Src homology 2 (SH2) domain

    4. XM_021501430.1 → XP_021357105.1  N-chimaerin-like isoform X1

      Related
      XP_021357105.1, XM_021501430.1
      Conserved Domains (3) summary
      pfam00130
      Location:256 → 305
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      cl02570
      Location:316 → 511
      RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
      cl15255
      Location:79 → 163
      SH2; Src homology 2 (SH2) domain

    5. XM_021501429.1 → XP_021357104.1  N-chimaerin-like isoform X1

      Related
      XP_021357104.1, XM_021501429.1
      Conserved Domains (3) summary
      pfam00130
      Location:256 → 305
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      cl02570
      Location:316 → 511
      RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
      cl15255
      Location:79 → 163
      SH2; Src homology 2 (SH2) domain

    6. XM_021501428.1 → XP_021357103.1  N-chimaerin-like isoform X1

      Related
      XP_021357103.1, XM_021501428.1
      Conserved Domains (3) summary
      pfam00130
      Location:256 → 305
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      cl02570
      Location:316 → 511
      RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
      cl15255
      Location:79 → 163
      SH2; Src homology 2 (SH2) domain

    7. XM_021501431.1 → XP_021357106.1  N-chimaerin-like isoform X1

      Related
      XP_021357106.1, XM_021501431.1
      Conserved Domains (3) summary
      pfam00130
      Location:256 → 305
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      cl02570
      Location:316 → 511
      RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
      cl15255
      Location:79 → 163
      SH2; Src homology 2 (SH2) domain
    Nucleotide Protein
    Heading Accession and Version

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