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    LOC110613490 protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [ Manihot esculenta (cassava) ]

    Gene ID: 110613490, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC110613490
    Gene description
    protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
    Locus tag
    MANES_04G041300v8
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Manihot esculenta
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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    Genomic context

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    See LOC110613490 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current M.esculenta_v8 (GCF_001659605.2) 4 NC_035164.2 (6799723..6802225, complement)
    100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG4 NC_035164.1 (5647278..5649787, complement)

    Chromosome 4 - NC_035164.2Genomic Context describing neighboring genes Neighboring gene ATPase family AAA domain-containing protein At1g05910 Neighboring gene uncharacterized LOC110613561 Neighboring gene endonuclease III homolog 1, chloroplastic Neighboring gene gamma-secretase subunit APH1-like Neighboring gene histidine protein methyltransferase 1 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CAAX-protein geranylgeranyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein farnesyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein farnesylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein geranylgeranylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CAAX-protein geranylgeranyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of protein farnesyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference M.esculenta_v8 Primary Assembly

    Genomic

    1. NC_035164.2 Reference M.esculenta_v8 Primary Assembly

      Range
      6799723..6802225 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021754646.2 → XP_021610338.1  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

      UniProtKB/TrEMBL
      A0A2C9VZJ2
      Conserved Domains (1) summary
      PLN02789
      Location:10 → 331
      PLN02789; farnesyltranstransferase
    Nucleotide Protein
    Heading Accession and Version

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