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    ACLA_045100 Nup133 nucleoporin, putative [ Aspergillus clavatus NRRL 1 ]

    Gene ID: 4704152, updated on 17-May-2024

    Summary

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    Gene symbol
    ACLA_045100
    Gene description
    Nup133 nucleoporin, putative
    Primary source
    FungiDB:ACLA_045100
    Locus tag
    ACLA_045100
    See related
    VEuPathDB:ACLA_045100
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Aspergillus clavatus NRRL 1 (strain: NRRL 1, type-material: culture from type material of Aspergillus clavatus)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Fumigati
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    Genomic context

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    See ACLA_045100 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    4

    NW_001517099.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene translation initiation factor, putative Neighboring gene malonyl CoA-acyl carrier protein transacylase, putative Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001517099.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. Fedorova ND, et al. PLoS Genet, 2008 Apr 11. PMID 18404212, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore outer ring IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Nup133 nucleoporin, putative
    XP_001271471.1
    • encoded by transcript ACLA_045100A
      predicted by EVM2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001517099.1 Reference assembly

      Range
      64210..68423 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001271470.1 → XP_001271471.1  Nup133 nucleoporin, putative [Aspergillus clavatus NRRL 1]

      See identical proteins and their annotated locations for XP_001271471.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A1CGP0
      Conserved Domains (2) summary
      pfam03177
      Location:616 → 1225
      Nucleoporin_C; Non-repetitive/WGA-negative nucleoporin C-terminal
      pfam08801
      Location:108 → 540
      Nucleoporin_N; Nup133 N terminal like
    Nucleotide Protein
    Heading Accession and Version

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