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    snrpe small nuclear ribonucleoprotein polypeptide E [ Acanthochromis polyacanthus (spiny chromis) ]

    Gene ID: 110951270, updated on 15-Mar-2024

    Summary

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    Gene symbol
    snrpe
    Gene description
    small nuclear ribonucleoprotein polypeptide E
    See related
    Ensembl:ENSAPOG00000024096
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acanthochromis polyacanthus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
    Orthologs
    human zebrafish all
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    Genomic context

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    See snrpe in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 5 NC_067117.1 (27167285..27171705, complement)

    Chromosome 5 - NC_067117.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon CAG) Neighboring gene wingless-type MMTV integration site family, member 4 Neighboring gene cell division cycle 42 Neighboring gene cilia- and flagella-associated protein 57-like Neighboring gene UF2 component of NDC80 kinetochore complex Neighboring gene EF-hand and coiled-coil domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067117.1 Chromosome 5 Reference KAUST_Apoly_ChrSc

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small nuclear ribonucleoprotein E

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KAUST_Apoly_ChrSc

    Genomic

    1. NC_067117.1 Reference KAUST_Apoly_ChrSc

      Range
      27167285..27171705 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022194241.2 → XP_022049933.1  small nuclear ribonucleoprotein E

      UniProtKB/TrEMBL
      A0A3Q1FY38
      Related
      ENSAPOP00000020517.1
      Conserved Domains (1) summary
      cd01718
      Location:11 → 89
      Sm_E; Sm protein E
    Nucleotide Protein
    Heading Accession and Version

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