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    LOC111004138 alpha-actinin, sarcomeric [ Pieris rapae (cabbage white) ]

    Gene ID: 111004138, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC111004138
    Gene description
    alpha-actinin, sarcomeric
    See related
    EnsemblRapid:ENSPRPG00005004469
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pieris rapae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Pieris
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC111004138 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    101 current ilPieRapa1.1 (GCF_905147795.1) 13 NC_059521.1 (9799056..9833374, complement)
    100 previous assembly P_rapae_3842_assembly_v2 (GCF_001856805.1) Unplaced Scaffold NW_019093187.1 (109035..143869)

    Chromosome 13 - NC_059521.1Genomic Context describing neighboring genes Neighboring gene probable 4-coumarate--CoA ligase 1 Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 2 Neighboring gene uncharacterized monothiol glutaredoxin ycf64-like Neighboring gene uncharacterized LOC111004149 Neighboring gene uncharacterized LOC123689639

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The molecular genetic basis of herbivory between butterflies and their host plants. Nallu S, et al. Nat Ecol Evol, 2018 Sep. PMID 30076351, Free PMC Article
    2. Genomic adaptation to agricultural environments: cabbage white butterflies (Pieris rapae) as a case study. Sikkink KL, et al. BMC Genomics, 2017 May 26. PMID 28549454, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle cell development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Z disc IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cortical actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-actinin, sarcomeric

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pieris rapae Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ilPieRapa1.1 Primary Assembly

    Genomic

    1. NC_059521.1 Reference ilPieRapa1.1 Primary Assembly

      Range
      9799056..9833374 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022275007.2 → XP_022130699.1  alpha-actinin, sarcomeric isoform X2

      Related
      ENSPRPP00005006735.1, ENSPRPT00005008597.1
      Conserved Domains (4) summary
      COG5069
      Location:37 → 377
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      cd00176
      Location:403 → 630
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam08726
      Location:830 → 896
      EFhand_Ca_insen; Ca2+ insensitive EF hand
      cl25352
      Location:751 → 857
      EFh_PEF; The penta-EF hand (PEF) family

    2. XM_022275006.2 → XP_022130698.1  alpha-actinin, sarcomeric isoform X1

      Related
      ENSPRPP00005006728.1, ENSPRPT00005008585.1
      Conserved Domains (4) summary
      COG5069
      Location:37 → 377
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      cd00176
      Location:403 → 630
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam08726
      Location:830 → 896
      EFhand_Ca_insen; Ca2+ insensitive EF hand
      cl25352
      Location:751 → 857
      EFh_PEF; The penta-EF hand (PEF) family

    3. XM_022275008.2 → XP_022130700.1  alpha-actinin, sarcomeric isoform X3

      Related
      ENSPRPP00005006749.1, ENSPRPT00005008616.1
      Conserved Domains (4) summary
      COG5069
      Location:37 → 403
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      cd00176
      Location:429 → 656
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam08726
      Location:856 → 922
      EFhand_Ca_insen; Ca2+ insensitive EF hand
      cl25352
      Location:777 → 883
      EFh_PEF; The penta-EF hand (PEF) family
    Nucleotide Protein
    Heading Accession and Version

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