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    LOC542581 elongation factor 1-alpha [ Zea mays ]

    Gene ID: 542581, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC542581
    Gene description
    elongation factor 1-alpha
    Locus tag
    ZEAMMB73_Zm00001d046449
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    EF1A; EF1-A; GRMZM2G153541
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    Genomic context

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    See LOC542581 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 9 NC_050104.1 (92392756..92395892)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 9 NC_024467.2 (90421920..90425056)

    Chromosome 9 - NC_050104.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100274502 Neighboring gene fatty acid elongase 1 Neighboring gene uncharacterized LOC100193064 Neighboring gene myristoyl-acyl carrier protein thioesterase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The electronic Plant Gene Register. . Plant Physiol, 1997 Apr. PMID 9112785, Free PMC Article
    2. Molecular cloning, characterization and expression of an elongation factor 1 alpha gene in maize. Berberich T, et al. Plant Mol Biol, 1995 Nov. PMID 8534856
    3. The eEFIA gene family is differentially expressed in maize endosperm. Carneiro NP, et al. Plant Mol Biol, 1999 Dec. PMID 10737145
    4. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    elongation factor 1-alpha
    Names
    EF-1-alpha
    elongation factor 1-alpha9
    putative translation elongation factor Tu family protein
    NP_001105587.1
    XP_020399436.1
    XP_020399437.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001112117.2 → NP_001105587.1  elongation factor 1-alpha

      See identical proteins and their annotated locations for NP_001105587.1

      Status: VALIDATED

      Source sequence(s)
      CABHLF010000005, U76259
      UniProtKB/Swiss-Prot
      Q41803
      UniProtKB/TrEMBL
      A0A3L6DBX0, O50018, Q08059
      Conserved Domains (1) summary
      PTZ00141
      Location:1 → 436
      PTZ00141; elongation factor 1- alpha; Provisional

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050104.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      92392756..92395892
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020543847.2 → XP_020399436.1  elongation factor 1-alpha isoform X1

      UniProtKB/Swiss-Prot
      Q41803
      UniProtKB/TrEMBL
      A0A3L6DBX0, O50018, Q08059
      Conserved Domains (1) summary
      PTZ00141
      Location:1 → 436
      PTZ00141; elongation factor 1- alpha; Provisional

    2. XM_020543848.2 → XP_020399437.1  elongation factor 1-alpha isoform X1

      UniProtKB/Swiss-Prot
      Q41803
      UniProtKB/TrEMBL
      A0A3L6DBX0, O50018, Q08059
      Conserved Domains (1) summary
      PTZ00141
      Location:1 → 436
      PTZ00141; elongation factor 1- alpha; Provisional

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001111468.1: Suppressed sequence

      Description
      NM_001111468.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q41803.1 GenPept UniProtKB/Swiss-Prot:Q41803

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