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    LOC18100270 DNA repair protein RAD51 homolog [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 18100270, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC18100270
    Gene description
    DNA repair protein RAD51 homolog
    Locus tag
    POPTR_006G135200v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC18100270 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 6 NC_037290.2 (11141320..11145046)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 6 NC_037290.1 (11167242..11171057)

    Chromosome 6 - NC_037290.2Genomic Context describing neighboring genes Neighboring gene putative invertase inhibitor Neighboring gene pectinesterase Neighboring gene solanesyl diphosphate synthase 3, chloroplastic/mitochondrial Neighboring gene AT-rich interactive domain-containing protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA strand exchange activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA recombinase assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA strand invasion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chromosome organization involved in meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic recombination-dependent replication fork processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in reciprocal meiotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in condensed nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA repair protein RAD51 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037290.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      11141320..11145046
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_052453579.1 → XP_052309539.1  DNA repair protein RAD51 homolog isoform X2

      UniProtKB/TrEMBL
      A0A2K2A1W1

    2. XM_024603443.2 → XP_024459211.1  DNA repair protein RAD51 homolog isoform X1

      UniProtKB/TrEMBL
      A0A2K2A1W1
      Conserved Domains (1) summary
      PLN03186
      Location:1 → 342
      PLN03186; DNA repair protein RAD51 homolog; Provisional
    Nucleotide Protein
    Heading Accession and Version

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