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    LOC112295732 E3 ubiquitin-protein ligase SP1-like [ Physcomitrium patens ]

    Gene ID: 112295732, updated on 20-Sep-2024

    Summary

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    Gene symbol
    LOC112295732
    Gene description
    E3 ubiquitin-protein ligase SP1-like
    Locus tag
    PHYPA_023924
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Physcomitrium patens
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium
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    Genomic context

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    See LOC112295732 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current Phypa V3 (GCF_000002425.4) 19 NC_037271.1 (5854631..5857178)

    Chromosome 19 - NC_037271.1Genomic Context describing neighboring genes Neighboring gene histidinol-phosphate aminotransferase 1, chloroplastic-like Neighboring gene phosphoribosylamine--glycine ligase-like Neighboring gene laccase-12-like Neighboring gene retinoblastoma-related protein-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037271.1 Chromosome 19 Reference Phypa V3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in organelle organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase SP1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Physcomitrella patens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Phypa V3 Primary Assembly

    Genomic

    1. NC_037271.1 Reference Phypa V3 Primary Assembly

      Range
      5854631..5857178
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024547631.1 → XP_024403399.1  E3 ubiquitin-protein ligase SP1-like

      UniProtKB/TrEMBL
      A9T6Y2
      Conserved Domains (2) summary
      pfam12483
      Location:86 → 236
      GIDE; E3 Ubiquitin ligase
      cd16515
      Location:304 → 343
      RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins

    2. XM_024547629.1 → XP_024403397.1  E3 ubiquitin-protein ligase SP1-like

      UniProtKB/TrEMBL
      A9T6Y2
      Conserved Domains (2) summary
      pfam12483
      Location:86 → 236
      GIDE; E3 Ubiquitin ligase
      cd16515
      Location:304 → 343
      RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins

    3. XM_024547626.1 → XP_024403394.1  E3 ubiquitin-protein ligase SP1-like

      UniProtKB/TrEMBL
      A9T6Y2
      Conserved Domains (2) summary
      pfam12483
      Location:86 → 236
      GIDE; E3 Ubiquitin ligase
      cd16515
      Location:304 → 343
      RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins

    4. XM_024547625.1 → XP_024403393.1  E3 ubiquitin-protein ligase SP1-like

      UniProtKB/TrEMBL
      A9T6Y2
      Conserved Domains (2) summary
      pfam12483
      Location:86 → 236
      GIDE; E3 Ubiquitin ligase
      cd16515
      Location:304 → 343
      RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins

    5. XM_024547627.1 → XP_024403395.1  E3 ubiquitin-protein ligase SP1-like

      UniProtKB/TrEMBL
      A9T6Y2
      Conserved Domains (2) summary
      pfam12483
      Location:86 → 236
      GIDE; E3 Ubiquitin ligase
      cd16515
      Location:304 → 343
      RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins

    6. XM_024547630.1 → XP_024403398.1  E3 ubiquitin-protein ligase SP1-like

      UniProtKB/TrEMBL
      A9T6Y2
      Conserved Domains (2) summary
      pfam12483
      Location:86 → 236
      GIDE; E3 Ubiquitin ligase
      cd16515
      Location:304 → 343
      RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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