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    CRNKL1 crooked neck pre-mRNA splicing factor 1 [ Pteropus alecto (black flying fox) ]

    Gene ID: 102894341, updated on 30-Mar-2024

    Summary

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    Gene symbol
    CRNKL1
    Gene description
    crooked neck pre-mRNA splicing factor 1
    Locus tag
    PAL_GLEAN10024015
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pteropus alecto
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
    Orthologs
    human mouse all
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    Genomic context

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    See CRNKL1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006442491.1 (2886637..2903401)

    NW_006442491.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 61 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene N-alpha-acetyltransferase 20, NatB catalytic subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006442491 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Prp19 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of post-mRNA release spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    crooked neck-like protein 1
    Names
    Crooked neck-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM32557v1 Primary Assembly

    Genomic

    1. NW_006442491.1 Reference ASM32557v1 Primary Assembly

      Range
      2886637..2903401
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006921550.3 → XP_006921612.1  crooked neck-like protein 1 isoform X1

      UniProtKB/TrEMBL
      L5JY02
      Conserved Domains (5) summary
      pfam02184
      Location:196 → 227
      HAT; HAT (Half-A-TPR) repeat
      smart00386
      Location:95 → 127
      HAT; HAT (Half-A-TPR) repeats
      COG5107
      Location:130 → 525
      RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
      sd00006
      Location:84 → 109
      TPR; TPR repeat [structural motif]
      pfam05843
      Location:232 → 322
      Suf; Suppressor of forked protein (Suf)

    2. XM_025040039.1 → XP_024895807.1  crooked neck-like protein 1 isoform X2

      UniProtKB/TrEMBL
      L5JY02
      Conserved Domains (4) summary
      pfam02184
      Location:196 → 227
      HAT; HAT (Half-A-TPR) repeat
      sd00006
      Location:84 → 109
      TPR; TPR repeat [structural motif]
      cl26712
      Location:64 → 195
      U3_assoc_6; U3 small nucleolar RNA-associated protein 6
      cl26993
      Location:318 → 547
      Suf; Suppressor of forked protein (Suf)

    3. XM_025040040.1 → XP_024895808.1  crooked neck-like protein 1 isoform X3

      UniProtKB/TrEMBL
      L5JY02
      Conserved Domains (4) summary
      pfam02184
      Location:196 → 227
      HAT; HAT (Half-A-TPR) repeat
      sd00006
      Location:84 → 109
      TPR; TPR repeat [structural motif]
      cl26712
      Location:64 → 195
      U3_assoc_6; U3 small nucleolar RNA-associated protein 6
      cl26993
      Location:318 → 507
      Suf; Suppressor of forked protein (Suf)
    Nucleotide Protein
    Heading Accession and Version

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