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    LOC112837729 somatotropin [ Callorhinus ursinus (northern fur seal) ]

    Gene ID: 112837729, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC112837729
    Gene description
    somatotropin
    See related
    EnsemblRapid:ENSCURG00000017533
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callorhinus ursinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Callorhinus
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    Genomic context

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    See LOC112837729 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current ASM326570v1 (GCF_003265705.1) Unplaced Scaffold NW_020312959.1 (451297..453526)

    NW_020312959.1Genomic Context describing neighboring genes Neighboring gene sodium channel protein type 4 subunit alpha Neighboring gene B-cell antigen receptor complex-associated protein beta chain-like Neighboring gene intercellular adhesion molecule 5-like Neighboring gene SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020312959 Unplaced Scaffold Reference ASM326570v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables growth hormone receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hormone activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in animal organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in growth hormone receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of growth IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of receptor signaling pathway via JAK-STAT IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of tyrosine phosphorylation of STAT protein IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to nutrient levels IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    somatotropin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Callorhinus ursinus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM326570v1 Primary Assembly

    Genomic

    1. NW_020312959.1 Reference ASM326570v1 Primary Assembly

      Range
      451297..453526
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025890283.1 → XP_025746068.1  somatotropin isoform X1

      UniProtKB/TrEMBL
      A0A3Q7QK03
      Conserved Domains (1) summary
      cd10285
      Location:101 → 280
      somatotropin_like; Somatotropin or growth hormone (GH), placental lactogen, and related pituitary gland hormones

    2. XM_025890284.1 → XP_025746069.1  somatotropin isoform X2

      UniProtKB/TrEMBL
      A0A3Q7QK02
      Related
      ENSCURP00000028616.1, ENSCURT00000032784.1
      Conserved Domains (1) summary
      cd10285
      Location:6 → 185
      somatotropin_like; Somatotropin or growth hormone (GH), placental lactogen, and related pituitary gland hormones
    Nucleotide Protein
    Heading Accession and Version

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