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    LOC108733425 protein ROP [ Agrilus planipennis (emerald ash borer) ]

    Gene ID: 108733425, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC108733425
    Gene description
    protein ROP
    See related
    EnsemblRapid:LOC108733425
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Agrilus planipennis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Elateriformia; Buprestoidea; Buprestidae; Agrilinae; Agrilus
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    Genomic context

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    See LOC108733425 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Apla_2.0 (GCF_000699045.2) Unplaced Scaffold NW_020438913.1 (1650147..1654392, complement)
    100 previous assembly Apla_1.0 (GCF_000699045.1) Unplaced Scaffold NW_017259637.1 (1651302..1654520, complement)

    NW_020438913.1Genomic Context describing neighboring genes Neighboring gene multivesicular body subunit 12B-like Neighboring gene ribonuclease H2 subunit A Neighboring gene 60S ribosomal protein L5 Neighboring gene 14 kDa phosphohistidine phosphatase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neurotransmitter secretion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle docking involved in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in secretory granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ROP

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Agrilus planipennis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Apla_2.0 Primary Assembly

    Genomic

    1. NW_020438913.1 Reference Apla_2.0 Primary Assembly

      Range
      1650147..1654392 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018464594.2 → XP_018320096.2  protein ROP isoform X2

      UniProtKB/TrEMBL
      A0A1W4W7M8
      Related
      XP_018320096.2, XM_018464594.2
      Conserved Domains (1) summary
      pfam00995
      Location:33 → 577
      Sec1; Sec1 family

    2. XM_018464595.2 → XP_018320097.2  protein ROP isoform X1

      UniProtKB/TrEMBL
      A0A1W4WI18
      Related
      XP_018320097.2, XM_018464595.2
      Conserved Domains (1) summary
      pfam00995
      Location:33 → 577
      Sec1; Sec1 family
    Nucleotide Protein
    Heading Accession and Version

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