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    YALI1_B26763g uncharacterized protein [ Yarrowia lipolytica ]

    Gene ID: 2906615, updated on 18-Sep-2024

    Summary

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    Gene symbol
    YALI1_B26763g
    Gene description
    uncharacterized protein
    Locus tag
    YALI1_B26763g
    See related
    FungiDB:YALI1_B26763g; VEuPathDB:YALI1_B26763g
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Yarrowia lipolytica (strain: CLIB89(W29), culture-collection: ATCC:20460)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Dipodascomycetes; Dipodascales; Dipodascales incertae sedis; Yarrowia
    Old locus tag
    YALI2_C00542g
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    Genomic context

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    See YALI1_B26763g in Genome Data Viewer
    Location:
    chromosome: 1B
    Exon count:
    1
    Sequence:
    Chromosome: 1B; NC_090771.1 (2676273..2677733)

    Chromosome 1B - NC_090771.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_090771.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence Assembly of Yarrowia lipolytica Strain W29/CLIB89 Shows Transposable Element Diversity. Magnan C, et al. PLoS One, 2016. PMID 27603307, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    XP_501137.1
    • Compare to YALI0B20460g, similar to uniprot|Q9USP9 Schizosaccharomyces pombe Hypothetical coiled-coil protein with RNA recognition motif

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_090771.1 Reference assembly

      Range
      2676273..2677733
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_501137.3 → XP_501137.1  uncharacterized protein YALI1_B26763g [Yarrowia lipolytica]

      See identical proteins and their annotated locations for XP_501137.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1D8N8Q3, A0A371C3K0, Q6CDX5
      Conserved Domains (3) summary
      pfam06098
      Location:255 → 307
      Radial_spoke_3; Radial spoke protein 3
      cd12257
      Location:176 → 247
      RRM1_RBM26_like; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
      cd21612
      Location:397 → 464
      RRM_AtRDRP1_like; RNA recognition motif (RRM) found in Arabidopsis thaliana RNA-dependent RNA polymerase 1 (AtRDRP1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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