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    GTF3501 predicted protein [ Ostreococcus lucimarinus CCE9901 ]

    Gene ID: 5004820, updated on 21-Dec-2023

    Summary

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    Gene symbol
    GTF3501
    Gene description
    predicted protein
    Locus tag
    OSTLU_26716
    Gene type
    protein coding
    RNA name
    predicted protein
    RefSeq status
    PROVISIONAL
    Organism
    Ostreococcus lucimarinus CCE9901 (strain: CCE9901)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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    Genomic context

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    See GTF3501 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Sequence:
    Chromosome: 12; NC_009366.1 (91567..92999)

    Chromosome 12 - NC_009366.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene possible psbY, PSII-Y, photosystem II polypeptide Neighboring gene predicted protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009366.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Palenik B, et al. Proc Natl Acad Sci U S A, 2007 May 1. PMID 17460045, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009366.1 Reference assembly

      Range
      91567..92999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001420547.1 → XP_001420584.1  predicted protein [Ostreococcus lucimarinus CCE9901]

      See identical proteins and their annotated locations for XP_001420584.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A4S5C7
      Conserved Domains (2) summary
      PLN00062
      Location:30 → 208
      PLN00062; TATA-box-binding protein; Provisional
      cd04516
      Location:30 → 203
      TBP_eukaryotes; eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation ...
    Nucleotide Protein
    Heading Accession and Version

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