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    ocm4.5.S oncomodulin 4 gene 5 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 379206, updated on 4-Nov-2024

    Summary

    Official Symbol
    ocm4.5.S
    Official Full Name
    oncomodulin 4 gene 5 S homeolog
    Primary source
    Xenbase:XB-GENE-17334862
    Locus tag
    XELAEV_18047610mg
    See related
    AllianceGenome:Xenbase:XB-GENE-17334862
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    oncm; oncomodulin; parvalbumin
    Summary
    Predicted to enable calcium ion binding activity. Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See ocm4.5.S in Genome Data Viewer
    Location:
    chromosome: 9_10S
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (96551389..96556136)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (89904663..89909410)

    Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene oncomodulin 4 gene 1 S homeolog Neighboring gene oncomodulin 4 gene 3 S homeolog Neighboring gene oncomodulin 4 gene 4 S homeolog Neighboring gene oncomodulin 4 gene 6 S homeolog Neighboring gene oncomodulin S homeolog

    Genomic regions, transcripts, and products

    General gene information

    Clone Names

    • MGC53945

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001086050.2NP_001079519.1  Parvalbumin beta-like

      See identical proteins and their annotated locations for NP_001079519.1

      Status: PROVISIONAL

      Source sequence(s)
      BC043986
      UniProtKB/Swiss-Prot
      P05940
      UniProtKB/TrEMBL
      A0A974BVJ1, Q7ZY39
      Conserved Domains (2) summary
      cd00051
      Location:44108
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:44107
      EF-hand_7; EF-hand domain pair

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      96551389..96556136
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)