U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC113498369 alanine aminotransferase 1-like [ Trichoplusia ni (cabbage looper) ]

    Gene ID: 113498369, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC113498369
    Gene description
    alanine aminotransferase 1-like
    See related
    EnsemblRapid:ENSNTCG00000010496
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trichoplusia ni
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC113498369 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current tn1 (GCF_003590095.1) 10 NC_039487.1 (12207861..12226799)

    Chromosome 10 - NC_039487.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113498148 Neighboring gene protein ALP1-like Neighboring gene low-density lipoprotein receptor-related protein megalin Neighboring gene alanine aminotransferase 1-like Neighboring gene uncharacterized LOC113498154

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_039487.1 Chromosome 10 Reference tn1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Transcriptome responses of the host Trichoplusia ni to infection by the baculovirus Autographa californica multiple nucleopolyhedrovirus. Chen YR, et al. J Virol, 2014 Dec. PMID 25231311, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-alanine:2-oxoglutarate aminotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    alanine aminotransferase 1-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Trichoplusia ni Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference tn1

    Genomic

    1. NC_039487.1 Reference tn1

      Range
      12207861..12226799
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026878386.1 → XP_026734187.1  alanine aminotransferase 1-like isoform X3

      UniProtKB/TrEMBL
      A0A7E5W0X6
      Related
      ENSNTCP00000013270.1, ENSNTCT00000016601.1

    2. XM_026878387.1 → XP_026734188.1  alanine aminotransferase 1-like isoform X4

      UniProtKB/TrEMBL
      A0A7E5W0P8
      Related
      ENSNTCP00000013277.1, ENSNTCT00000016607.1

    3. XM_026878385.1 → XP_026734186.1  alanine aminotransferase 1-like isoform X2

      UniProtKB/TrEMBL
      A0A7E5W1M3
      Related
      ENSNTCP00000013265.1, ENSNTCT00000016594.1
      Conserved Domains (1) summary
      cl27741
      Location:64 → 540
      Aminotran_1_2; Aminotransferase class I and II

    4. XM_026878384.1 → XP_026734185.1  alanine aminotransferase 1-like isoform X1

      UniProtKB/TrEMBL
      A0A7E5W0R8
      Related
      ENSNTCP00000013257.1, ENSNTCT00000016586.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases