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    BRPF3 bromodomain and PHD finger containing 3 [ Lagenorhynchus obliquidens (Pacific white-sided dolphin) ]

    Gene ID: 113630844, updated on 15-Mar-2024

    Summary

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    Gene symbol
    BRPF3
    Gene description
    bromodomain and PHD finger containing 3
    See related
    EnsemblRapid:ENSLOBG00000017309
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lagenorhynchus obliquidens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Lagenorhynchus
    Orthologs
    human mouse all
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    Genomic context

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    See BRPF3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current ASM367639v1 (GCF_003676395.1) Unplaced Scaffold NW_020837975.1 (8433920..8470205)

    NW_020837975.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113630865 Neighboring gene mitogen-activated protein kinase 13 Neighboring gene uncharacterized LOC113630868 Neighboring gene patatin like phospholipase domain containing 1 Neighboring gene BCL2 interacting protein 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020837975 Unplaced Scaffold Reference ASM367639v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MOZ/MORF histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bromodomain and PHD finger-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lagenorhynchus obliquidens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM367639v1 Primary Assembly

    Genomic

    1. NW_020837975.1 Reference ASM367639v1 Primary Assembly

      Range
      8433920..8470205
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027126731.1 → XP_026982532.1  bromodomain and PHD finger-containing protein 3 isoform X3

      Related
      ENSLOBP00000023519.1, ENSLOBT00000025736.1
      Conserved Domains (5) summary
      cd05512
      Location:594 → 691
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      cd15703
      Location:269 → 386
      ePHD_BRPF3; Extended PHD finger found in bromodomain and PHD finger-containing protein 3 (BRPF3) and similar proteins
      pfam15429
      Location:834 → 974
      DUF4628; Domain of unknown function (DUF4628)
      cl26518
      Location:117 → 605
      EPL1; Enhancer of polycomb-like
      cl28033
      Location:786 → 1098
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    2. XM_027126726.1 → XP_026982527.1  bromodomain and PHD finger-containing protein 3 isoform X1

      Related
      ENSLOBP00000023489.1, ENSLOBT00000025704.1
      Conserved Domains (5) summary
      cd05839
      Location:1076 → 1191
      BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
      cd05512
      Location:594 → 691
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      cd15703
      Location:269 → 386
      ePHD_BRPF3; Extended PHD finger found in bromodomain and PHD finger-containing protein 3 (BRPF3) and similar proteins
      pfam15429
      Location:834 → 974
      DUF4628; Domain of unknown function (DUF4628)
      cl26518
      Location:117 → 605
      EPL1; Enhancer of polycomb-like

    3. XM_027126729.1 → XP_026982530.1  bromodomain and PHD finger-containing protein 3 isoform X3

      Conserved Domains (5) summary
      cd05512
      Location:594 → 691
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      cd15703
      Location:269 → 386
      ePHD_BRPF3; Extended PHD finger found in bromodomain and PHD finger-containing protein 3 (BRPF3) and similar proteins
      pfam15429
      Location:834 → 974
      DUF4628; Domain of unknown function (DUF4628)
      cl26518
      Location:117 → 605
      EPL1; Enhancer of polycomb-like
      cl28033
      Location:786 → 1098
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    4. XM_027126727.1 → XP_026982528.1  bromodomain and PHD finger-containing protein 3 isoform X2

      Conserved Domains (5) summary
      cd05512
      Location:594 → 691
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      cd15703
      Location:269 → 386
      ePHD_BRPF3; Extended PHD finger found in bromodomain and PHD finger-containing protein 3 (BRPF3) and similar proteins
      pfam15429
      Location:834 → 974
      DUF4628; Domain of unknown function (DUF4628)
      cl02554
      Location:1076 → 1146
      PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...
      cl26518
      Location:117 → 605
      EPL1; Enhancer of polycomb-like

    5. XM_027126730.1 → XP_026982531.1  bromodomain and PHD finger-containing protein 3 isoform X3

      Conserved Domains (5) summary
      cd05512
      Location:594 → 691
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      cd15703
      Location:269 → 386
      ePHD_BRPF3; Extended PHD finger found in bromodomain and PHD finger-containing protein 3 (BRPF3) and similar proteins
      pfam15429
      Location:834 → 974
      DUF4628; Domain of unknown function (DUF4628)
      cl26518
      Location:117 → 605
      EPL1; Enhancer of polycomb-like
      cl28033
      Location:786 → 1098
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    RNA

    1. XR_003437112.1 RNA Sequence

      Related
      ENSLOBT00000025725.1

    2. XR_003437113.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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