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    LOC113860065 sm-like protein LSM5 [ Abrus precatorius (Indian licorice) ]

    Gene ID: 113860065, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC113860065
    Gene description
    sm-like protein LSM5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Abrus precatorius
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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    Genomic context

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    See LOC113860065 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current Abrus_2018 (GCF_003935025.1) Unplaced Scaffold NW_020874362.1 (36873920..36878115, complement)

    NW_020874362.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g14730 Neighboring gene probable starch synthase 4, chloroplastic/amyloplastic Neighboring gene chlorophyll a-b binding protein of LHCII type 1 Neighboring gene uncharacterized LOC113860064

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020874362 Unplaced Scaffold Reference Abrus_2018

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Lsm1-7-Pat1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sm-like protein LSM5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Abrus precatorius Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Abrus_2018

    Genomic

    1. NW_020874362.1 Reference Abrus_2018

      Range
      36873920..36878115 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027492691.1 → XP_027348492.1  sm-like protein LSM5

      UniProtKB/TrEMBL
      A0A8B8KX56
      Conserved Domains (1) summary
      cd01732
      Location:7 → 82
      LSm5; Like-Sm protein 5
    Nucleotide Protein
    Heading Accession and Version

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