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    LOC5506418 eukaryotic translation initiation factor 3 subunit D [ Nematostella vectensis (starlet sea anemone) ]

    Gene ID: 5506418, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC5506418
    Gene description
    eukaryotic translation initiation factor 3 subunit D
    Locus tag
    NEMVEDRAFT_v1g235689
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nematostella vectensis
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
    Also known as
    eIF3d
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    Genomic context

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    See LOC5506418 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current jaNemVect1.1 (GCF_932526225.1) 12 NC_064045.1 (6065711..6075421)
    100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834209.1 (346536..356241)

    Chromosome 12 - NC_064045.1Genomic Context describing neighboring genes Neighboring gene vesicular inhibitory amino acid transporter Neighboring gene uncharacterized LOC5506414 Neighboring gene gamma-interferon-inducible lysosomal thiol reductase Neighboring gene gamma-interferon-inducible lysosomal thiol reductase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of eukaryotic translation initiation factor 3 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor 3 subunit D
    Names
    Eukaryotic translation initiation factor 3 subunit 7
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference jaNemVect1.1

    Genomic

    1. NC_064045.1 Reference jaNemVect1.1

      Range
      6065711..6075421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001627063.3 → XP_001627113.1  eukaryotic translation initiation factor 3 subunit D

      See identical proteins and their annotated locations for XP_001627113.1

      UniProtKB/Swiss-Prot
      A7SMR1
      Conserved Domains (1) summary
      pfam05091
      Location:7 → 527
      eIF-3_zeta; Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A7SMR1.1 GenPept UniProtKB/Swiss-Prot:A7SMR1

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