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    LOC114408537 plastocyanin [ Glycine soja ]

    Gene ID: 114408537, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC114408537
    Gene description
    plastocyanin
    Locus tag
    D0Y65_008522
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine soja
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC114408537 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current ASM419377v2 (GCF_004193775.1) 4 NC_041005.1 (1603031..1603828)

    Chromosome 4 - NC_041005.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase STY46-like Neighboring gene ornithine decarboxylase-like Neighboring gene phospholipase D delta-like Neighboring gene tetracycline resistance protein, class H-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041005.1 Chromosome 4 Reference ASM419377v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid lumen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plastocyanin
    Names
    Plastocyanin, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine soja Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM419377v2 Primary Assembly

    Genomic

    1. NC_041005.1 Reference ASM419377v2 Primary Assembly

      Range
      1603031..1603828
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028371621.1 → XP_028227422.1  plastocyanin

      UniProtKB/TrEMBL
      A0A445KUC7
      Conserved Domains (1) summary
      pfam00127
      Location:67 → 165
      Copper-bind; Copper binding proteins, plastocyanin/azurin family
    Nucleotide Protein
    Heading Accession and Version

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