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    LOC114403932 pentatricopeptide repeat-containing protein At4g18520, chloroplastic-like [ Glycine soja ]

    Gene ID: 114403932, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC114403932
    Gene description
    pentatricopeptide repeat-containing protein At4g18520, chloroplastic-like
    Locus tag
    D0Y65_052888
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine soja
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC114403932 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current ASM419377v2 (GCF_004193775.1) 20 NC_041021.1 (2473480..2477936)

    Chromosome 20 - NC_041021.1Genomic Context describing neighboring genes Neighboring gene protein argonaute 2-like Neighboring gene putative E3 ubiquitin-protein ligase LIN Neighboring gene polygalacturonase-like Neighboring gene protein TERMINAL FLOWER 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041021.1 Chromosome 20 Reference ASM419377v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At4g18520, chloroplastic-like
    Names
    Pentatricopeptide repeat-containing protein, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine soja Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM419377v2 Primary Assembly

    Genomic

    1. NC_041021.1 Reference ASM419377v2 Primary Assembly

      Range
      2473480..2477936
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028367170.1 → XP_028222971.1  pentatricopeptide repeat-containing protein At4g18520, chloroplastic-like isoform X1

      Conserved Domains (2) summary
      PLN03077
      Location:287 → 813
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:668 → 695
      PPR; PPR repeat [structural motif]

    2. XM_028367171.1 → XP_028222972.1  pentatricopeptide repeat-containing protein At4g18520, chloroplastic-like isoform X2

      UniProtKB/TrEMBL
      A0A445F016
      Conserved Domains (2) summary
      PLN03077
      Location:271 → 797
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:652 → 679
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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