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    Usp42 ubiquitin specific peptidase 42 [ Peromyscus leucopus (white-footed mouse) ]

    Gene ID: 114707558, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Usp42
    Gene description
    ubiquitin specific peptidase 42
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Peromyscus leucopus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
    Orthologs
    human mouse all
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    Genomic context

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    See Usp42 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    101 current UCI_PerLeu_2.1 (GCF_004664715.2) 23 NC_051082.1 (44384303..44406666, complement)
    100 previous assembly Pero_0.1 (GCF_004664715.1) Unplaced Scaffold NW_021630484.1 (632245..655480, complement)

    Chromosome 23 - NC_051082.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114707580 Neighboring gene family with sequence similarity 220 member A Neighboring gene U6 spliceosomal RNA Neighboring gene cytohesin 3 Neighboring gene uncharacterized LOC114707562 Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 1 Neighboring gene ankyrin repeat domain 61

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 42

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Peromyscus leucopus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCI_PerLeu_2.1 Primary Assembly

    Genomic

    1. NC_051082.1 Reference UCI_PerLeu_2.1 Primary Assembly

      Range
      44384303..44406666 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028890318.2 → XP_028746151.1  ubiquitin carboxyl-terminal hydrolase 42 isoform X2

      Conserved Domains (2) summary
      cd02661
      Location:109 → 409
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam05109
      Location:416 → 589
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    2. XM_028890315.2 → XP_028746148.1  ubiquitin carboxyl-terminal hydrolase 42 isoform X1

      Conserved Domains (2) summary
      cd02661
      Location:109 → 409
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam05109
      Location:416 → 589
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    3. XM_028890316.2 → XP_028746149.1  ubiquitin carboxyl-terminal hydrolase 42 isoform X1

      Conserved Domains (2) summary
      cd02661
      Location:109 → 409
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam05109
      Location:416 → 589
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    Nucleotide Protein
    Heading Accession and Version

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