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    tcf4 transcription factor 4 [ Echeneis naucrates (live sharksucker) ]

    Gene ID: 115052488, updated on 21-Dec-2023

    Summary

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    Gene symbol
    tcf4
    Gene description
    transcription factor 4
    See related
    Ensembl:ENSENLG00000017279
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Echeneis naucrates
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis
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    Genomic context

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    See tcf4 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current fEcheNa1.1 (GCF_900963305.1) 12 NC_042522.1 (2626702..2824231)

    Chromosome 12 - NC_042522.1Genomic Context describing neighboring genes Neighboring gene thioredoxin-like 1 Neighboring gene ATPase phospholipid transporting 8B1 Neighboring gene uncharacterized LOC115052331 Neighboring gene BRCA1/BRCA2-containing complex, subunit 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042522.1 Chromosome 12 Reference fEcheNa1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Echeneis naucrates Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fEcheNa1.1 Primary Assembly

    Genomic

    1. NC_042522.1 Reference fEcheNa1.1 Primary Assembly

      Range
      2626702..2824231
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029516636.1 → XP_029372496.1  transcription factor 4 isoform X3

      UniProtKB/TrEMBL
      A0A665W8K4

    2. XM_029516638.1 → XP_029372498.1  transcription factor 4 isoform X5

      UniProtKB/TrEMBL
      A0A665W8K4

    3. XM_029516634.1 → XP_029372494.1  transcription factor 4 isoform X1

      UniProtKB/TrEMBL
      A0A665W8K4

    4. XM_029516639.1 → XP_029372499.1  transcription factor 4 isoform X6

      UniProtKB/TrEMBL
      A0A665W8K4, A0A665W960
      Related
      ENSENLP00000040217.1, ENSENLT00000041248.1
      Conserved Domains (1) summary
      cd18945
      Location:584 → 668
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    5. XM_029516635.1 → XP_029372495.1  transcription factor 4 isoform X2

      UniProtKB/TrEMBL
      A0A665W8K4

    6. XM_029516640.1 → XP_029372500.1  transcription factor 4 isoform X7

      UniProtKB/TrEMBL
      A0A665W8K4

    7. XM_029516637.1 → XP_029372497.1  transcription factor 4 isoform X4

      UniProtKB/TrEMBL
      A0A665W8K4

    8. XM_029516645.1 → XP_029372505.1  transcription factor 4 isoform X11

      UniProtKB/TrEMBL
      A0A665W8K4
      Related
      ENSENLP00000040221.1, ENSENLT00000041252.1

    9. XM_029516641.1 → XP_029372501.1  transcription factor 4 isoform X8

      UniProtKB/TrEMBL
      A0A665W8L0

    10. XM_029516644.1 → XP_029372504.1  transcription factor 4 isoform X10

      UniProtKB/TrEMBL
      A0A665W8L0
      Related
      ENSENLP00000040226.1, ENSENLT00000041256.1

    11. XM_029516643.1 → XP_029372503.1  transcription factor 4 isoform X9

      UniProtKB/TrEMBL
      A0A665W8L0
      Conserved Domains (1) summary
      cd18945
      Location:413 → 497
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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